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Table 1 Statistics for the filtering and mapping of reads

From: Transcriptomic characterization of cold acclimation in larval zebrafish

Sample name ck1 ck2 ck3 cold1 cold2 cold3
Total reads (M) 19.80x2 24.72x2 19.48x2 26.51x2 21.07x2 24.57x2
Good reads (M) 38.05 47.76 37.62 50.92 40.74 47.56
% Good reads 96.09 96.61 96.58 96.06 96.67 96.80
Processed reads (M) 37.52 47.22 37.18 50.20 40.25 46.95
Mapped reads (M) 34.85 43. 40 34.38 46.06 37.26 43.34
% Mapped 92.89 91.90 92.47 91.77 92.56 92.33
Total alignment (M) 45.55 56.44 45.57 57.91 47.28 55.32
Total potential splices (M) 5.27 5.32 5.27 5.32 5.28 5.27
% Reads mapped to junction 15.13 12.26 15.33 11.54 14.16 12.16
Unique mapping (M) 34.41 43.00 34.29 45.46 36.82 43.02
% Unique mapping 75.54 76.17 75.25 78.50 77.87 77.75
% Uniquely mapped reads 98.73 99.07 99.74 98.70 98.83 99.24
  1. % unique mapping indicates the ratio of unique mapping to the total alignment.