Table 1 Wallemia ichthyophaga (EXF-994) genome assembly statistics and comparison with Wallemia sebi (adapted from [4] or calculated from the genomic data published online [76])
Statistic | W. ichthyophaga | W. sebi |
|---|---|---|
Coverage | >270× | 71× |
Genome assembly size (Mb) | 9.625 | 9.82 |
Number of scaffolds | 82 | 56 |
Scaffold N50 (Mb) | 0.44 | 0.34 |
Number of contigs | 101 | 114 |
Contig N50 (Mb) | 0.35 | |
CDS total length (Mb) | 7.083 (73.59% of genome) | 6.701 (68.39% of genome) |
CDS average size (bp) | 1450 | 1268 |
Predicted protein-coding genes (n) | 4884 | 5284 |
Predicted proteins, average length (aa) | 483 | 423 |
Exon total length (Mb) | 7.083 | |
Exon total number | 16670 | |
Exon average length (bp) | 424 | 410 |
Introne total length (Mb) | 0.719 | |
Introne total number | 11786 | |
Introne average length (bp) | 61 | 55 |
GC content (%) | 45.35 | 40.01 |
GC content of CDS (%) | 47.51 | 42.06 |
Repeat content (kb) | 160.929 (1.67% of genome) | |
- Tandem repeats (kb) | 85.47 | |
- DNA transposons (kb) | 84.77 | |
tRNA (kb) | 11.55 |