From: Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium
Genes regulated | FDR q-value | NESH | |||||
---|---|---|---|---|---|---|---|
Gene set | Size of gene setA | AerobicB | H2O2C | AerobicD | H2O2E | AerobicF | H2O2G |
Glycerophospholipid metabolism | 25 | 5 | 5 | 0.001 | 0.000 | 2.16 | 2.29 |
Purine metabolism | 73 | 19 | 35 | 0.003 | 0.000 | 2.06 | 2.22 |
Pyrimidine metabolism | 50 | 14 | 18 | 0.044 | 0.003 | 1.79 | 2.02 |
Lipopolisaccharide biosynthesis | 26 | 17 | 0.004 | 1.98 | |||
Glutathione metabolism | 16 | 8 | 0.005 | 1.94 | |||
Bacterial invasion of epithelial cells | 8 | 8 | 5 | 0.002 | 0.012 | −1.9 | 1.87 |
Glycolysis/gluconeogenesis | 33 | 10 | 10 | 0.250 | 0.022 | 0.46 | 1.81 |
Biosynthesis of siderophore group non-ribosomal peptides | 5 | 4 | 0.067 | 1.69 | |||
Glycerolipid metabolism | 10 | 1 | 1 | 0.083 | 0.109 | 1.68 | 1.6 |
Flagellar assembly | 34 | 7 | 0.189 | 1.5 | |||
Phosphotransferase system (PTS) | 32 | 17 | 17 | 0.001 | 0.000 | −1.88 | −2.26 |
ABC transporters | 124 | 46 | 29 | 0.005 | 0.022 | −1.83 | −1.86 |
Salmonella infection | 16 | 8 | 0.001 | −2.04 | |||
Bacterial secretion system | 28 | 12 | 0.005 | −1.79 | |||
Bacterial chemotaxis | 22 | 6 | 0.049 | −1.63 | |||
Two-component system | 88 | 11 | 0.096 | −1.56 | |||
Cyanoamino acid metabolism | 6 | 3 | 0.129 | −1.52 | |||
Ascorbate and aldarate metabolism | 8 | 3 | 0.117 | −1.52 | |||
Amino sugar and nucleotide sugar metabolism | 50 | 14 | 0.213 | −1.43 | |||
Fructose and mannose metabolism | 34 | 14 | 0.233 | −1.43 | |||
Starch and sucrose metabolism | 26 | 14 | 0.244 | −1.39 | |||
Ribosome | 45 | 28 | 0.004 | 2.01 | |||
Riboflavin metabolism | 8 | 3 | 0.113 | 1.63 | |||
Cysteine and methionine metabolism | 24 | 8 | 0.137 | 1.59 |