Table 2 Genes differentially expressed by ArcA under aerobic conditions with or without H 2 O 2 that have predicted ArcA binding sites
From: Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium
Gene ID | Gene ID | Gene name | Fold change H2O2/control | Fold change control | Strand | PositionA | Sequence | p-valueB | Function | |
|---|---|---|---|---|---|---|---|---|---|---|
LT2 | 14028s | 14028s | ΔarcA | ΔarcA/14028s | 5′ - 3′ | |||||
STM0958 | STM14_1080.J | trxB | 4.93 | 1.9 | 1.35 | - | 94 | GTTAACAATATGTGT | 1.00E-05 | thioredoxin reductase |
+ | 85 | GTTAACAAAATCGTT | 5.70E-05 | |||||||
STM1520 | STM14_1838 | marR | 1.75 | −1.38 | −1.02 | - | 73 | GTCAACTAAATGAAT | 9.50E-05 | DNA-binding transcriptional repressor MarR |
STM1586 | STM14_1918 | - | 5.55 | 2.75 | 1.06 | + | 171 | GTTAAGAAAATGTGC | 9.50E-05 | putative periplasmic protein |
STM3216 | STM14_3893 | tsr | 1.17 | −1.65 | −1.31 | - | 198 | GTTAACCATTTCTTA | 8.10E-06 | putative methyl-accepting chemotaxis protein |
STM2445 | STM14_3003 | ucpA | −5.34 | −1.83 | −1.86 | + | 44 | GTTAATGGAGTGTAA | 1.20E-05 | short chain dehydrogenase |
STM1795 | STM14_2170 | gluD | −6.28 | −1.34 | −1.94 | - | 121 | GTTAACTATCCGCTA | 9.50E-05 | putative glutamic dehyrogenase-like protein |
STM4087 | STM14_4913 | glpF | −1.63 | −5.7 | 8.77 | + | 217 | GTTAATGAAATGATT | 1.00E-05 | glycerol diffusion |
STM1771 | STM14_2141 | chaA | −1.77 | −5.97 | 3.31 | - | 36 | GTTAATATTTTGGAA | 8.00E-05 | calcium/sodium:proton antiporter |
STM1125 | STM14_1281 | putP | −8.81 | −3.4 | −3.46 | + | 234 | GTTAACACTTTTAAA | 9.50E-05 | major sodium/proline symporter |
STM1091 | STM14_1237 | sopB | −2.17 | −3.57 | −5.89 | + | 52 | GTTAACCCTGTTGAA | 8.00E-05 | secreted effector protein |
STM2866 | STM14_3463 | sprB | −6.06 | −2.32 | −3.51 | + | 281 | GTTAATGAAAGGGAA | 8.10E-06 | transcriptional regulator |
STM4405 | STM14_5290 | ytfJ | −3.2 | −1.45 | −2.31 | - | 67 | GTTAATCATATGTGC | 3.30E-05 | putative transcriptional regulator |
STM4535 | STM14_5449 | - | −2.7 | −1.04 | −2.76 | - | 98 | GTTAACAGAGGGAAA | 9.50E-05 | putative PTS permease |
STM4467 | STM14_5361 | −1.83 | 1.02 | −2.07 | - | 271 | GTTAATTATTTGTTT | 6.50E-06 | arginine deiminase | |
STM1130 | STM14_1293 | nanM | −2.58 | 1.01 | −2.92 | + | 115 | GATAACTCCATGTAA | 8.00E-05 | putative inner membrane protein |
STM4165 | STM14_5006 | rsd | 2.75 | 1.69 | 2.74 | - | 67 | GTTAACAACATGCCA | 1.20E-05 | anti-RNA polymerase sigma 70 factor |
STM1728 | STM14_2091 | yciG | 1.68 | 1.95 | −2.11 | - | 261 | GTTAATGCATTGTTT | 1.50E-05 | putative cytoplasmic protein |
STM0292 | STM14_0341 | - | 1.18 | 2.12 | 2.18 | - | 248 | GTTCATCAAATGTAG | 6.80E-05 | putative RHS-like protein |
STM2220 | STM14_2744 | yejG | 5.84 | 2.41 | 2.94 | + | 64 | GTCAATGATGTGTTA | 6.80E-05 | hypothetical protein |
STM1770 | STM14_2140 | chaB | 2.07 | 3.64 | −2.12 | + | 245 | GTTAATATTTTGGAA | 8.00E-05 | cation transport regulator |
STM1211 | STM14_1385.J | ndh | 7.09 | 3.58 | 2.24 | - | 44 | GTTAATTAAAAGTTA | 1.10E-06 | respiratory NADH dehydrogenase 2 |
+ | 65 | GTTAATTAAAGGCTA | 1.00E-05 | |||||||
- | 33 | ATTAACCAATTGTTA | 9.50E-05 | |||||||
STM1746.S | STM14_2110 | oppA | −7.87 | −2.46 | −3.08 | + | 318 | GTTAACAAAATTGTA | 1.00E-05 | oligopeptide transport protein |
- | 327 | GTTAACCAATTCTCT | 6.80E-05 | |||||||
STM1818 | STM14_2199 | fadD | −1.56 | −1.85 | 2.56 | + | 75 | GTTAATATAATGTTA | 1.00E-05 | long-chain-fatty-acid--CoA ligase |
+ | 64 | GTTAACGACTTGTTT | 1.00E-05 | |||||||
STM3692 | STM14_4451 | lldP | −13.27 | −2.11 | −6.83 | - | 125 | GTTAACCAGATGTTA | 2.00E-06 | L-lactate permease |
+ | 136 | GTTAACTATTTGTTG | 5.20E-06 | |||||||
- | 173 | GTTAATTTAATGAAA | 1.90E-05 | |||||||
STM1303 | STM14_1582 | argD | −2.63 | −1.11 | −2.95 | - | 40 | GTTATTTATATGTTA | 2.80E-05 | bifunctional succinylornithine transaminase |
+ | 112 | GTTTATGCAATGTTA | 5.70E-05 | |||||||