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Table 3 Classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus (MDV) infection in common between broilers and layers at the nucleotide position and gene level

From: Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and layer chickens

SNP type

Nucleotide-level match

Gene-level match

 

SNPs

Genes

Genes

Downstream

12

11

86

Exonic

18

18

231

Exonic Splicing

0

0

0

Intergenic

25

25

301

Intronic

6

6

117

ncRNA_exonic

0

0

0

Splicing

0

0

0

Upstream

1

1

9

Upstream:Downstream

0

0

2

UTR’3

9

9

101

UTR’5

1

1

3

UTR’3: UTR’5

0

0

0

Total

72

71

850