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Table 3 Classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus (MDV) infection in common between broilers and layers at the nucleotide position and gene level

From: Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and layer chickens

SNP type Nucleotide-level match Gene-level match
  SNPs Genes Genes
Downstream 12 11 86
Exonic 18 18 231
Exonic Splicing 0 0 0
Intergenic 25 25 301
Intronic 6 6 117
ncRNA_exonic 0 0 0
Splicing 0 0 0
Upstream 1 1 9
Upstream:Downstream 0 0 2
UTR’3 9 9 101
UTR’5 1 1 3
UTR’3: UTR’5 0 0 0
Total 72 71 850