Skip to main content

Table 1 Selected 5’untranslated regions (5'UTRs)

From: RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

RNA feature

Start

Stop

Length

Downstream gene

Antisense genes

cis-regulatory element

NPKM value*

BLi_r0085

210580

210926

347

thrZ

 

T-box

1966

BLi_r0356

542296

542520

225

BLi00536

 

ydaO-yuaA leader

1368

BLi_r0498

712264

712587

324

yybP

 

yybP-ykoY leader

1144

BLi_r0691

942026

942290

306

thiC

 

TPP

5030

BLi_r0744

998913

999033

121

glpD

  

5693

BLi_r0943

1207762

1207542

180

yitJ

 

SAM

2782

BLi_r0982

1243825

1243498

328

trpS

 

T-box

865

BLi_r0983

1244045

1244232

188

oppA

  

1465

BLi_r1011

1271178

1271391

255

tenA

 

TPP

9963

BLi_r1028

1291984

1292289

306

metI

 

SAM

3605

BLi_r1168

1487545

1487279

226

mtnK

 

SAM

2207

BLi_r1196

1510226

1511237

1012

BLi05023

BLi01539, BLi01540

 

651

BLi_r1485

1973018

1973209

192

BLi02027

  

1035

BLi_r1609

2118173

2117083

1091

gltA

gltC

 

34

BLi_r1634

2146236

2145933

304

expZ

  

1225

BLi_r1709

2204969

2205111

143

dhaS

  

2816

BLi_r1801

2295779

2295571

168

xpt

 

Purine

1540

BLi_r1835

2356768

2356478

291

hbs

  

3478

BLi_r1850

2382265

2381914

352

ribU

 

FMN

2367

BLi_r1871

2409288

2409010

238

ribD

 

FMN

2512

BLi_r2045

2616129

2615830

300

glyQ

 

T-box

787

BLi_r2142

2742406

2742106

301

yrzI

  

860

BLi_r2241

2878256

2877902

313

lysC

 

Lysine

751

BLi_r2286

2949768

2949565

204

citZ

  

1563

BLi_r2389

3060789

3060456

292

leuS

 

T-box

998

BLi_r2510

3188213

3185988

2226

kapD

yuxJ, pbpD

 

13

BLi_r2628

3302655

3302393

221

metN2

 

SAM

2661

BLi_r3184

4014316

4014539

224

yxjG

 

SAM

5296

BLi_r3195

4037045

4036819

185

BLi04205

 

TPP

9303

BLi_r3196

4037110

4037236

127

BLi04206

  

2693

  1. *(pooled RNA-Seq data).