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Table 3 Selected non-coding RNAs (ncRNAs)

From: RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

RNA feature Start Stop Length Class Rfam Upstream gene Downstream gene Antisense genes NPKM value*
BLi_r0016 30440 30837 398 indep Scr tadA dnaX   223117
BLi_r0026 54282 49490 4793 A misc RnaA    metS, yabD, yabE, rnmV 18
BLi_r0086 212998 213153 156 indep   thrZ BLi00235   242952
BLi_r0253 413569 412086 1484 A misc     BLi00412, BLi00413 14
BLi_r0415 617488 617027 462 A misc     thiL 6
BLi_r0451 653178 652888 291 A misc     BLi00649 15139
BLi_r0844 1082413 1082091 323 indep   yhaA1 hit   8039
BLi_r0872 1108968 1109111 144 A I     apr 25689
BLi_r1000 1262387 1262504 118 indep RsaE pepF yjbL   5791
BLi_r1034 1300088 1300311 224 indep   pbpE1 BLi01297   1902
BLi_r1306 1639742 1639946 205 A misc SR1    speA 502
BLi_r1347 1673741 1673635 107 A misc CsfG    ylbG, ylbH 5366
BLi_r1424 1898847 1898597 251 indep   yqeD BLi01936   2023
BLi_r1454 1929530 1929709 180 indep BsrB     26604
BLi_r1474 1960434 1960112 323 indep   BLi02008    61592
BLi_r1596 2101575 2102388 814 A I     cysP2 12
BLi_r1645 2156680 2156597 84 indep   yobS yndG   13545
BLi_r1808 2302203 2301803 401 indep RnpB gpsB ypsC   55930
BLi_r1834 2355791 2356137 347 A misc     folE 1
BLi_r2049 2634028 2634231 204 A misc SurC    dnaK 29
BLi_r2163 2770133 2769931 203 indep BsrA aspS yrvM   389442
BLi_r2390 3060847 3062662 1816 A misc     ytvB, yttB 11
BLi_r2624 3299320 3299025 296 indep BsrI yurZ BLi03452   514
BLi_r2645 3325524 3323636 1889 A 3'UTR   yirB   cssR, cssS 112
BLi_r2758 3469610 3469009 602 indep SsrA smpB BLi03638   78287
BLi_r2780 3485163 3485306 144 indep   BLi03658 BLi03670   3747
BLi_r2828 3552518 3552467 52 indep   trxB yvcI   15924
BLi_r2863 3611192 3612078 887 A misc     degU, degS 5
BLi_r2925 3692599 3692663 65 A I     BLi03865 14110
BLi_r3203 4050815 4050900 86 A misc     bglP 35711
  1. *(pooled RNA-Seq data).
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