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Table 3 Selected non-coding RNAs (ncRNAs)

From: RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation

RNA feature

Start

Stop

Length

Class

Rfam

Upstream gene

Downstream gene

Antisense genes

NPKM value*

BLi_r0016

30440

30837

398

indep

Scr

tadA

dnaX

 

223117

BLi_r0026

54282

49490

4793

A misc

RnaA

  

metS, yabD, yabE, rnmV

18

BLi_r0086

212998

213153

156

indep

 

thrZ

BLi00235

 

242952

BLi_r0253

413569

412086

1484

A misc

   

BLi00412, BLi00413

14

BLi_r0415

617488

617027

462

A misc

   

thiL

6

BLi_r0451

653178

652888

291

A misc

   

BLi00649

15139

BLi_r0844

1082413

1082091

323

indep

 

yhaA1

hit

 

8039

BLi_r0872

1108968

1109111

144

A I

   

apr

25689

BLi_r1000

1262387

1262504

118

indep

RsaE

pepF

yjbL

 

5791

BLi_r1034

1300088

1300311

224

indep

 

pbpE1

BLi01297

 

1902

BLi_r1306

1639742

1639946

205

A misc

SR1

  

speA

502

BLi_r1347

1673741

1673635

107

A misc

CsfG

  

ylbG, ylbH

5366

BLi_r1424

1898847

1898597

251

indep

 

yqeD

BLi01936

 

2023

BLi_r1454

1929530

1929709

180

indep

BsrB

   

26604

BLi_r1474

1960434

1960112

323

indep

 

BLi02008

  

61592

BLi_r1596

2101575

2102388

814

A I

   

cysP2

12

BLi_r1645

2156680

2156597

84

indep

 

yobS

yndG

 

13545

BLi_r1808

2302203

2301803

401

indep

RnpB

gpsB

ypsC

 

55930

BLi_r1834

2355791

2356137

347

A misc

   

folE

1

BLi_r2049

2634028

2634231

204

A misc

SurC

  

dnaK

29

BLi_r2163

2770133

2769931

203

indep

BsrA

aspS

yrvM

 

389442

BLi_r2390

3060847

3062662

1816

A misc

   

ytvB, yttB

11

BLi_r2624

3299320

3299025

296

indep

BsrI

yurZ

BLi03452

 

514

BLi_r2645

3325524

3323636

1889

A 3'UTR

 

yirB

 

cssR, cssS

112

BLi_r2758

3469610

3469009

602

indep

SsrA

smpB

BLi03638

 

78287

BLi_r2780

3485163

3485306

144

indep

 

BLi03658

BLi03670

 

3747

BLi_r2828

3552518

3552467

52

indep

 

trxB

yvcI

 

15924

BLi_r2863

3611192

3612078

887

A misc

   

degU, degS

5

BLi_r2925

3692599

3692663

65

A I

   

BLi03865

14110

BLi_r3203

4050815

4050900

86

A misc

   

bglP

35711

  1. *(pooled RNA-Seq data).