From: Efficient and accurate whole genome assembly and methylome profiling of E. coli
Assembler | Data type | kmer | Approx. coverage | Avg identity | Indels<5Â bp | Indels>= 5Â bp | Inversions | Unalignable contigs | Relocations | SNPs |
---|---|---|---|---|---|---|---|---|---|---|
Velvet | MiSeq | 59 | 100X | 99.99 | 13 | 38 | 2 | 0 | 16 | 42 |
 |  | 59 | 75X | 99.99 | 23 | 31 | 0 | 0 | 12 | 110 |
 |  | 59 | 50X | 99.99 | 18 | 36 | 1 | 0 | 17 | 88 |
 |  | 59 | 25X | 99.99 | 36 | 129 | 0 | 0 | 8 | 96 |
Ray | MiSeq | 36 | 100X | 100 | 1 | 6 | 2 | 19 | 2 | 9 |
 |  | 36 | 75X | 99.99 | 5 | 10 | 0 | 11 | 2 | 35 |
 |  | 36 | 50X | 99.99 | 2 | 3 | 0 | 8 | 2 | 26 |
 |  | 36 | 25X | 100 | 5 | 5 | 1 | 4 | 4 | 41 |
 | Ion | 29 | 100X | 99.86 | 5645 | 29 | 0 | 4 | 1 | 67 |
 |  | 29 | 75X | 99.9 | 4209 | 14 | 0 | 4 | 1 | 58 |
 |  | 29 | 50X | 99.93 | 2784 | 7 | 0 | 0 | 0 | 58 |
 |  | 29 | 25X | 99.95 | 1933 | 3 | 0 | 1 | 1 | 54 |
MIRA | MiSeq | n/a | 100X | 99.99 | 8 | 6 | 13 | 2 | 15 | 73 |
 |  | n/a | 75X | 99.99 | 20 | 4 | 11 | 0 | 11 | 124 |
 |  | n/a | 50X | 99.99 | 31 | 5 | 15 | 0 | 9 | 113 |
 |  | n/a | 25X | 99.99 | 9 | 7 | 7 | 0 | 7 | 81 |
 | Ion | n/a | 100X | 99.98 | 207 | 6 | 11 | 4 | 11 | 50 |
 |  | n/a | 75X | 99.98 | 239 | 8 | 14 | 2 | 9 | 42 |
 |  | n/a | 50X | 99.98 | 292 | 10 | 9 | 1 | 8 | 58 |
 |  | n/a | 25X | 99.98 | 524 | 10 | 9 | 0 | 3 | 34 |