Table 5 Hybrid and PacBio-only assembly statistics
From: Efficient and accurate whole genome assembly and methylome profiling of E. coli
Correction method | Starting PacBio coverage | Contigs | N50 | Mean | Max | Total bases | Scaffolds | N50 | Mean | Max | Total bases |
|---|---|---|---|---|---|---|---|---|---|---|---|
Ion | 110X | 25 | 549762 | 188222 | 793657 | 4705573 | 23 | 694467 | 204622 | 1763628 | 4706308 |
| Â | 185X | 31 | 360777 | 153272 | 869306 | 4751442 | 27 | 1231116 | 176143 | 1631314 | 4755875 |
MiSeq | 110X | 42 | 174522 | 107856 | 364773 | 4529989 | 30 | 328144 | 151322 | 588420 | 4539669 |
| Â | 185X | 49 | 140368 | 92321 | 349122 | 4523744 | 36 | 349122 | 125872 | 648829 | 4531394 |
Preassembler | 110X | 22 | 543086 | 212632 | 2026296 | 4677908 | 19 | 696126 | 246383 | 2200813 | 4681278 |
| Â | 185X | 21 | 737479 | 224642 | 1239560 | 4717483 | 21 | 737479 | 224642 | 1239560 | 4717483 |