Table 6 Evaluating Hybrid and PacBio-only assemblies
From: Efficient and accurate whole genome assembly and methylome profiling of E. coli
Correction method | Starting PacBio coverage | % Assembly Size | Avg Identity | Indels<5Â bp | Indels>= 5 | Inversions | Missing assembly contigs | Relocation | SNPs |
|---|---|---|---|---|---|---|---|---|---|
Ion | 110X | 103.23% | 99.98 | 859 | 3 | 0 | 0 | 1 | 103 |
Ion | 185X | 104.32% | 99.98 | 893 | 4 | 0 | 0 | 1 | 94 |
MiSeq | 110X | 99.58% | 99.99 | 149 | 3 | 3 | 0 | 3 | 117 |
MiSeq | 185X | 99.40% | 99.99 | 66 | 2 | 1 | 0 | 2 | 104 |
Self-correction | 110X | 102.68% | 99.96 | 1489 | 4 | 0 | 0 | 1 | 61 |
Self-correction | 185X | 103.48% | 99.99 | 358 | 2 | 0 | 0 | 1 | 14 |