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Table 6 Evaluating Hybrid and PacBio-only assemblies

From: Efficient and accurate whole genome assembly and methylome profiling of E. coli

Correction method Starting PacBio coverage % Assembly Size Avg Identity Indels<5 bp Indels>= 5 Inversions Missing assembly contigs Relocation SNPs
Ion 110X 103.23% 99.98 859 3 0 0 1 103
Ion 185X 104.32% 99.98 893 4 0 0 1 94
MiSeq 110X 99.58% 99.99 149 3 3 0 3 117
MiSeq 185X 99.40% 99.99 66 2 1 0 2 104
Self-correction 110X 102.68% 99.96 1489 4 0 0 1 61
Self-correction 185X 103.48% 99.99 358 2 0 0 1 14