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Table 7 Bal225 and DH5α assembly statistics

From: Efficient and accurate whole genome assembly and methylome profiling of E. coli

Strain Correction method Starting PacBio coverage Contigs N50 Mean Max Total bases Scaffolds N50 Mean Max Total bases
Bal225 Ion 135X 31 489478 155895 1066404 4832765 26 2445003 185934 2445003 4834296
  MiSeq 135X 54 136035 84636 313301 4570378 33 265913 139590 436896 4606486
  Self-correction 135X 19 1024938 252532 2094681 4798125 16 1042373 300014 2094681 4800239
DH5alpha Ion 95x 17 746888 276544 1350460 4701255 16 1016980 293829 1350460 4701268
   198X 6 2698624 769397 2698624 4616384 4 3138824 1154252 3138824 4617009
  MiSeq 95x 49 144080 92313 279069 4523338 31 279069 146814 664426 4551239
   198X 48 144514 93565 356157 4491145 35 189228 128837 694092 4509302
  Self-correction 95x 33 317772 140959 711007 4651647 19 503567 245691 1492059 4668131
   198X 35 274671 133071 845967 4657500 18 705151 259942 971908 4678967