Table 7 Bal225 and DH5α assembly statistics
From: Efficient and accurate whole genome assembly and methylome profiling of E. coli
Strain | Correction method | Starting PacBio coverage | Contigs | N50 | Mean | Max | Total bases | Scaffolds | N50 | Mean | Max | Total bases |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bal225 | Ion | 135X | 31 | 489478 | 155895 | 1066404 | 4832765 | 26 | 2445003 | 185934 | 2445003 | 4834296 |
| Â | MiSeq | 135X | 54 | 136035 | 84636 | 313301 | 4570378 | 33 | 265913 | 139590 | 436896 | 4606486 |
| Â | Self-correction | 135X | 19 | 1024938 | 252532 | 2094681 | 4798125 | 16 | 1042373 | 300014 | 2094681 | 4800239 |
DH5alpha | Ion | 95x | 17 | 746888 | 276544 | 1350460 | 4701255 | 16 | 1016980 | 293829 | 1350460 | 4701268 |
| Â | Â | 198X | 6 | 2698624 | 769397 | 2698624 | 4616384 | 4 | 3138824 | 1154252 | 3138824 | 4617009 |
| Â | MiSeq | 95x | 49 | 144080 | 92313 | 279069 | 4523338 | 31 | 279069 | 146814 | 664426 | 4551239 |
| Â | Â | 198X | 48 | 144514 | 93565 | 356157 | 4491145 | 35 | 189228 | 128837 | 694092 | 4509302 |
| Â | Self-correction | 95x | 33 | 317772 | 140959 | 711007 | 4651647 | 19 | 503567 | 245691 | 1492059 | 4668131 |
| Â | Â | 198X | 35 | 274671 | 133071 | 845967 | 4657500 | 18 | 705151 | 259942 | 971908 | 4678967 |