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Table 8 Improvements seen with Quiver

From: Efficient and accurate whole genome assembly and methylome profiling of E. coli

Correction method Starting PacBio coverage Indels<5 bp before Quiver Indels<5 bp after Quiver Indels<5 bp % improvement Indels>= 5 before Quiver Indels>= 5 after Quiver Indels>= 5% improvement SNPs before Quiver SNPs after Quiver SNPs % improvement
Ion 110X 859 292 66.01% 3 2 33.33% 103 30 70.87%
Ion 185X 893 173 80.63% 4 1 75.00% 94 10 89.36%
MiSeq 110X 149 73 51.01% 3 2 33.33% 117 2 98.29%
MiSeq 185X 66 56 15.15% 2 1 50.00% 104 28 73.08%
Self-correction 110X 1489 237 84.08% 4 2 50.00% 61 36 40.98%
Self-correction 185X 358 90 74.86% 2 1 50.00% 14 5 64.29%