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Table 9 Identified methylation patterns

From: Efficient and accurate whole genome assembly and methylome profiling of E. coli

Strain

Genotype

6 mA - Enriched motifs(percent)

5mC

BL21(DE3)

dam(+), dcm(−), hsdSB(rB- mB-)

GA TC (94.83)

  

None

Bal225

dam(−), dcm(−)

AA C6NGTGC (97.86)

GCA C6NGTT (96.71)

 

None

DH5α

dam(+), dcm(+)

AA C6NGTGC (98.15)

GCA C6NGTT (98.82)

GA TC (98.49)

CC WGG (40.20)

  1. The nucleotide bases in bold are the nucleotides that are covalently modified by their respective enzymes.