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Table 12 Sequences for interspecies PRE sequence comparison

From: PuF, an antimetastatic and developmental signaling protein, interacts with the Alzheimer’s amyloid-β precursor protein via a tissue-specific proximal regulatory element (PRE)

Species

Abbreviation

Common name

Sequence

Loc.a

Base weightb

Homo sapiens

Hom sap

human

[GenBank:NT_011512.1]

13204753.13205282

11

Pan troglodytes

Pan tro

chimpanzee

[GenBank:NT_106996.1]

12354873.12355401

11

Gorilla gorilla

Gor gor

western gorilla

Ensembl:gorGor3.1:21

14453005.14453533

10

Pongo pygmaeus

Pon pyg

Bornean orangutan

[GenBank:NW_002891078.1]

100309.100838

10

Nomascus leucogenys

Nom leu

northern white-cheeked gibbon

[Genbank:NW_003501402]

11777748.11778275

7

Macaca mulatta

Mac mul

rhesus monkey

[GenBank:NW_001114168.1]

7908454.7908980

7

Callithrix jacchus

Cal jac

common marmoset

[GenBank:NW_003184659]

4142710.4143249

6

Tarsius syrichta

Tar syr

Philippine tarsier

[GenBank:ABRT010367312]

35.605

5

Otolemur garnettii

Oto gar

greater galago

Ensembl:scaffold:OtoGar3:GL873528.1

10760940.10765774

4

Cavia porcellus

Cav por

guinea pig

[GenBank:NT_176367]

7334345.7334880

10

Octodon degus

Oct deg

common degu

[GenBank:AJSA01048215]

19979.20497

10

Heterocephalus glaber

Het gla

naked mole rat

[GenBank:AFSB01163805]

427.1000

6

Ictidomys tridecemlineatus

Ict tri

thirteen-lined ground squirrel

[GenBank:AAQQ01741479]

107.624

9

Mus musculus

Mus mus

house mouse

[GenBank:NT_039625.8]

19878914.19879574

9

Rattus norvegicus

Rat nor

Norway rat

[GenBank:NW_047354]

24693771.24694300

8

Dipodomys ordii

Dip ord

Ord’s kangaroo rat

[GenBank:ABRO01075802]

1.581

6

Oryctolagus cuniculus

Ory cun

European rabbit

[GenBank:NW_003159292]

59870509.59871025

5

Ochotona princeps

Och pri

American pika

[GenBank:AAYZ01049311]

693.1006

5

Bos primigenius taurus

Bos pri t

cow

[GenBank:NW_003103795.1]

2852543.2853063

12

Bos primigenius indicus

Bos pri i

zebu

[GenBank:AGFL01000631]

71936.72456

12

Tursiops truncatus

Tur tru

bottlenose dolphin

[GenBank:ABRN02546477]

189.717

7

Sus scrofa

Sus scr

pig

[GenBank:NW_003611878]

681338.681875

6

Ailuropoda melanoleuca

Ail mel

giant panda

[GenBank:NW_003217675]

561990.562540

8

Mustela puturius furo

Mus put f

domestic ferret

[GenBank:AEYP01042946]

556.1076

8

Canis lupus familiaris

Can lup f

dog

[GenBank:NW_003726114]

21614163.21614717

7

Pteropus vampyrus

Pte vam

flying fox

[GenBank:ABRP01159960]

503.1000

4

Condylura cristata

Con cry

star-nosed mole

[GenBank:AJFV01010076]

10886.11380

3

Loxodonta africanus

Lox afr

African elephant

[GenBank:NW_003573433.1]

30067875.30068350

4

Procavia capensis

Pro cap

rock hyrax

[GenBank:ABRQ01094447]

1072.1437

4

Echinops telfairi

Ech tel

lesser hedgehog tenrec

[GenBank:AAIY01071949]

2252.2666

3

Choloepus hoffmanni

Cho hof

Hoffman’s two-toed sloth

[GenBank:ABVD01435293]

1.364

3

Dasypus novemcinctus

Das nov

nine-banded armadillo

[GenBank:AAGV03159065]

1.297

3

Macropus eugenii

Mac eug

Tammar wallaby

[GenBank:ABQO020034033]

684.1293

2

Sarcophilus harrisii

Sar har

Tasmanian devil

[GenBank:AEFK01137980]

744.1216

2

Mondelphis domestica

Mon dom

gray short-tailed opossum

[GenBank:NW_001581956.1]

6492289.6491655

1

  1. aLocation within accession numbered database sequence.
  2. bBase weight was used to determine specific weights for each analysis as described in the main text.