Table 2 Partially methylated CpG islands with high concordance
Locus* | CpG island* | Location and annotation |
|---|---|---|
chr6: 106959764-106960985 | CpG 114 | Exon-Intron 1 of AIM1 (melanoma suppressor) |
chr7: 807336-808261 | CpG 79 | Promoter of HEATR2 alternative transcript |
chr19:36604359-36606906 | CpG 194 | Overlaps Promoters of TBCB/ POLR21 (polymerase sub-unit gene ) |
chr19:55992577-55996916 | CpG 321 | Last exon of ZNF628/ promoter of NAT14 (acetyltransferase) |
chr1:41847264-41849204 | CpG168 | Last exon of FOXO6 |
chr1:111746337-111747303 | CpG 94 | Promoter of DENN/MADD domain containing 2D |
chr4:154712073-154712706 | CpG 57 | Downstream of SFRP2 (Wnt singnalling) |
chr12:22486835-22488666 | Cpg 163 | Promoter of ST8SIA1 (sialyltransferase for ganglioside production) |
chr13:33001249-33002078 | CpG 93 | Intron 1 of NEDD4 binding protein 2-like 1 isoform 1 |
chr19:1584445-1585247 | CpG 89 | Exon-intron of MBD3 (Nurd complex subunit: nucleosome remodeling) |
chr22:29706500_29706710 | CpG 15 | Exon-intron 3–4 of GAS2L1 (similar to Gas2, Actin-associated protein) |
chr9:36,222,678-36,294,377 | CpG 76 | Promoter of GNE, enzyme for N-Acetyl Neuraminic Acid regulation |
chr11:497359-511488 | CpG 46 | Exon-intron 2 of RNH1 (placental ribonuclease inhibitor) |
chr19:10304966-10305864 | CpG 89 | Promoter of DNMT1 (DNA Methyl transferase) |
chr15:96856299-96875368 | CpG 145 | Upstream of NR2F2 (steroid thyroid family of nuclear receptors) |
chr2:241496576-241497600 | CpG 96 | Exon-intron of ANKMY1 (Ankyrin repeat and MYND domain containing protein) |
chr7:127671159-127672853 | CpG 156 | Exon-intron of SND1 (p100 co-activator) |
chr4:169799086-169799625 | CpG 58 | Exon-intron of PALLD (cytoskeletal protein involved in actin organization) |