Table 2 Functional distribution of the sequences in the SUNREP database
Sequence type | Â | Number |
|---|---|---|
DNA transposons | Unclassified | 373 |
| Â | Tc1 Mariner | 5 |
| Â | hAT | 67 |
| Â | Mutator | 101 |
| Â | PIF-Harbinger | 18 |
| Â | CACTA | 64 |
| Â | Helitron | 324 |
| Â | MITE | 382 |
Retrotransposons | Unclassified | 192 |
| Â | LTR-Copia | 8,605 |
| Â | LTR-Gypsy | 19,726 |
| Â | LTR-Unknown | 5,636 |
| Â | Non-LTR | 261 |
| Â | Pararetrovirus | 11 |
Tandem repeats and SSR | Â | 385 |
rDNA | Â | 84 |
Putative genes | Â | 483 |
Unknown repeats | Unclassified | 4,739 |
| Â | Contig 61 type [18] | 957 |
No hits found | Â | 5,511 |
Total | Â | 47,924 |