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Table 5 Types and distribution of simple sequence repeats

From: Generation, functional annotation and comparative analysis of black spruce (Picea mariana) ESTs: an important conifer genomic resource

Type of repeat

Repeat motif

% of sequences having repeat motif

Pentanucleotide repeats

(CGCAG)4

0.07

 

(TCAGA)4

0.07

 

(TGGTC)4

0.07

Tetranucleotide repeats

(ACAT)4

0.07

 

(CCTG)5

0.07

 

(TAAT)4

0.07

Trinucleotide repeats

(AAC)4

0.15

 

(AAG)4

0.15

 

(AAT)4

0.07

 

(ACG)4

0.07

 

(AGA)4

0.07

 

(AGC)4or6

0.11 or 0.07

 

(AGG)4or5

0.22 or 0.07

 

(ATA)5

0.07

 

(ATC)4

0.11

 

(ATG)4

0.11

 

(CAC)5or6

0.07 or 0.07

 

(CAG)4or5or6

0.15 or 0.11 or 0.07

 

(CAT)4

0.11

 

(CCA)5

0.07

 

(CCG)4

0.07

 

(CGC)5

0.07

 

(CGG)4

0.07

 

(CTC)4or5

0.07 or 0.11

 

(CTG)4or5

0.11 or 0.11

 

(CTT)4or6

0.11 or 0.07

 

(GAA)4or5

0.22 or 0.07

 

(GAC)8

0.07

 

(GAG)4or8

0.11 or 0.07

 

(GAT)4

0.07

 

(GCA)4

0.15

 

(GCC)6

0.07

 

(GCT)4

0.11

 

(GGA)4or5

0.22 or 0.07

 

(TAA)4

0.07

 

(TAG)4

0.07

 

(TAT)5or6

0.07 or 0.07

 

(TCA)4

0.11

 

(TCC)4or5

0.15 or 0.07

 

(TCT)4or5

0.11 or 0.15

 

(TGA)4

0.07

 

(TGC)4

0.07

 

(TGG)6

0.07

 

(TTC)4

0.26

 

(TTG)4

0.11

Dinucleotide repeats

(AC)4or5or6

0.77 or 0.18 or 0.11

 

(AG)4or5

1.39 or 0.15

 

(AT)4or5or6or7or8

2.27 or 0.70 or 0.11 or 0.15 or 0.15

 

(CA)4or5or6

0.81 or 0.07 or 0.11

 

(CG)4or5or6

0.29 or 0.11 or 0.07

 

(CT)4or5

0.84 or 0.18

 

(GA)4or5or6

0.99 or 0.07 or 0.18

 

(GC)4or5or6

0.40 or 0.15 or 0.07

 

(GT)4or5or6

0.37 or 0.07 or 0.07

 

(TA)4or5or6or7

2.05 or 0.37 or 0.11 or 0.11

 

(TC)4or5or6

1.28 or 0.22 or 0.07

 

(TG)4or5

0.73 or 0.15

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