Table 2 Set of 21 smRNAs (8 miRNAs and 13 siRNAs) that were independently identified over 9 experimental treatments and matched all criteria for smRNA identification
miRNA | Sequence | Length | Stem-loop length | MFE [kcalmol-1] | Read count mature strand | Read count star strand |
|---|---|---|---|---|---|---|
smb107.2 | CAAGGAUGGGAUGCUCAGAGAA | 22 | 88 | −69.3 | 13,315 | 398 (9) |
smb107.3 | CAAGGAUGGGAUGGUCAGAGAA | 22 | 88 | −64.1 | 3,322 | 398 (9) |
smb123 | CAGUCGGCCAAAGUGCUGGACC | 22 | 89 | −64.1 | 451 | 154 (9) |
smb203 | CUUUGUAUCCCGGAUCCUGAUA | 22 | 87 | −46.6 | 1,087 | 389 (9) |
smb215 | GAGGAUGCUGAUCAUUCACUGG | 22 | 87 | −80.6 | 85 | 34 (8) |
smb295 | UCAGAGACCAGACGCAGAGGCU | 22 | 90 | −40.6 | 12,543 | 160 (9) |
smb297 | UCAGUGGCAGAAGCUGGGAACU | 22 | 87 | −63.5 | 965 | 60 (8) |
smb313 | UCGAACUUUCAGGAAUAGUAUC | 22 | 87 | −54.8 | 2,707 | 1475 (9) |
siRNA | Sequence | Length | Stem-loop length | MFE [kcalmol-1] | Read count mature strand | Read count star strand |
smb21 | AAUUUGAACGUUGCCAUCUAUC | 22 | 87 | −72.5 | 123 | 9 (7) |
smb41 | ACCUGCAGCAUUUGGCGCCUGA | 22 | 84 | −77.9 | 299 | 18 (7) |
smb51 | ACUUAGAACUCUCCUACGAGGG | 22 | 88 | −83.1 | 510 | 275 (8) |
smb79 | AGUUGGACCAGACCAGUUGGUC | 22 | 87 | −71.7 | 489 | 319 (9) |
smb83 | AUCACUCCACAAAGGGAUUUG | 21 | 87 | −65.5 | 217 | 7 (5) |
smb101 | CAACGAGAUUGGCCUUCUGUGC | 22 | 87 | −82.9 | 5,234 | 412 (9) |
smb163 | CGGGACUCGAUUCGGAGGGUGC | 22 | 88 | −63.6 | 2,015 | 660 (9) |
smb271 | UAGAAUGUAGUCGUCAUCUUGC | 22 | 88 | −68.9 | 1,044 | 29 (9) |
smb303 | UCCGCCGUGCAACUGUCGCAAC | 22 | 88 | −80.2 | 207 | 107 (9) |
smb359 | UGAUGUACAUCGAUUGAUCGAC | 22 | 86 | −63.8 | 646 | 23 (9) |
smb365 | UGCCAACGUGAUUUGCAACUCC | 22 | 84 | −68.1 | 333 | 75 (7) |
smb379 | UGGACUUGGAAAGCUUCUCUGC | 22 | 86 | −76.7 | 2,505 | 2 (2) |
smb427 | UUUGUCCAGUGUACCUGCGCU | 21 | 85 | −73 | 728 | 50 (8) |