Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types

Table 5 List of genes affected by early stop codon

Gene locus	Gene name	Gene function	COG	COG function	Stop codon position*	Gene size	Amino acid length	Protein length of original (%)	Genomes (Phage types)
STM0054		Oxalacetate decarboxylase subunit beta	C	Energy production and conversion	766	1,302	434	59	DT2
STM0097	polB	DNA polymerase II	L	Replication, recombination and repair	1,726	2,352	784	73	L796 (DT99)
STM2261	napF	Ferredoxin-type protein	C	Energy production and conversion	157	492	164	32	L796 (DT99)
STM2315	yfbK	Hypothetical protein	R	General function prediction only	643	1,782	594	36	L927 (DT12a)
STM2517	sinH	Intimin-like protein			1,213	2,193	731	55	L927 (DT12a)
STM2758		Phosphotransferase system IIC component	G	Carbohydrate transport and metabolism	469	1,542	514	30	DT2
STM2771	fljb	Flagellin	N	Cell motility	337	1,521	507	22	T000240
STM3644	bisC	Biotin sulfoxide reductase	C	Energy production and conversion	148	2,334	778	6	L796 (DT99)
STM3666	ysaA	Oxidoreductase	C	Energy production and conversion	64	474	158	14	L796 (DT99)
STM3745		Cytoplasmic protein			613	852	284	72	L796 (DT99), L904 (DT9), D23580
STM4022	yihT	Aldolase	G	Carbohydrate transport and metabolism	430	879	293	49	L796 (DT99)
STM4339	blc	Outer membrane lipoprotein Blc	M	Cell wall/membrane/envelope biogenesis	127	534	178	24	L927 (DT12a)
STM4413		Metallo-dependent hydrolase	R	General function prediction only	382	1,164	388	33	L847 (DT197)
STM4495		Type II restriction enzyme methylase subunit	V	Defense mechanisms	334	1,092	364	31	L904 (DT9)
STM4593	sthB	Fimbrial usher protein	NU	Cell motility, intracellular trafficking and secretion	307	2,538	846	12	L796 (DT99)

ISSN: 1471-2164