Skip to main content

Table 2 Cold regulated transcription factors

From: Genome-scale cold stress response regulatory networks in ten Arabidopsis thalianaecotypes

Ecotype

Unique TFs (Up regulated)

Unique TFs (Down regulated)

Cvi

ANAC014, ANAC042, ANAC058, AtHB24, AtHB32, AtMYB103, CUC1, HEC1, HSFB2A, LBD27, LBD35, LD, PIL6, SRL2, At3g20880, At4g00150, At1g09060, At3g11450, At5g45270

AIL6, ANAC041, ANAC074, ANAC103, ARR2, ASML2, AtHB23, AtMYB11, AtMYB17, AtMYB86, AtNAC3, AtY13, bt5, EMB3008, ETC1, GNC, HAt22, HDG12, IAA18, LBD23, MAF4, MYB113, MYB3, MYB33, MYB92, MYC6.2, NTL9, PAN, PCF1, PUX2, SDG40, SGR1, SPL5, SUVR4, tcp17, TCP3, TGA6, VND1, WOX13, WRKY50, At1g16640, At3g06160, At4g34400, At4g00940, At5g49300, At3g57480, At5g10970, At2g05160, At5g40880, At3g16940, t5g38140, At2g20110, At1g07520, At1g63100, At1g44810, At4g00232, At4g26170, At1g09710, At1g33420, At2g01810, At3g53370, At5g51910, At1g76870, At1g26260, At1g62975, At4g00870, At4g14410, At4g29930, At5g46830, At5g65320

Kas.1

AtGRF3, BPC6, HAt3, HSFA8, IAA29, SSL2, SWN, WRKY3, WRKY32, WRKY66, At3g45260, At1g67310, At2g45460

AL1, BT4, DUO1, GBF6, HSFB1, HSFB4, MNP, TED5, TIFY3B, U2AF35B, ZBF1, ZFN3, ZFP4, At5G52020, At5G06770, At5G41920, At4G22140, At5G50670, At1G03040, At3G23690

Kyo.2

AtIDD2, CAL1, HAt14, LCL1, PHE2, RAP2.9, SNZ, SPL3, TOC1, At4g18870, At5g51790

HDT3, PMG1, TRFL6, UNE12, WER1, At5g61190, At4g23800, At2g45800, At1g69170, At1g68920, At2g46510

Col-0

At3G50750, At2G27630, At5G22990, At1G48195, At4G37850

ACD6, ACS3, CYP71A28, CYP81K1, MEA, MLP28, MYB24, PSRP5, RCK, STR16, XIJ, At3g21570, At5g33260, At2g21930, At5g26930, At5g15620, At3g18840, At1g31370, At2g01031, At2g09850, At2g24930, At1g79120, At4g09070, At3g56600, At5g39150, At2g35300, At1g23570, At5g02140, At1g23060, At3g14750, At1g27300, At3g16840, At3g03920, At2g07671, At1g53060, At5g66230, At5g58570, At5g26690, At1g27330, At1g18720, At5g18850

Kond

AGL79, ANAC077, AtGRF6, LBD14, SCL11, TIFY9 (JAZ10), WRKY10, At3g06410, At3g51950,

ADOF2, ANAC097, AtHB27, BME3-ZF, bZIP61, GIF2, HAP3A, HAP5B,ING1, RAP2.11, TGA1, At3g51080, At2g40970, At5g47390

Sha

AGL58, ANAC009, SET1, STY2, At4g33880

AGL24, AGL43, CRF1, ETT, IAA7, LBD38, PHB-1D, PTAC1, SRS8, ZFHD2, At5g02460, At5g41030

C24

ADOF1, ANAC045, ANAC061, ANAC069, AtIDD16, AtIDD5, CDF1, CDF2 , COL2 , DREB2A, HSF A4A, IAA1, LBD32, MP, MYB51, MYB77, RVE2, SPL1R2, SSRP1,SUVH3, WRKY26, WRKY33, WRKY40, WRKY55, At5g51190, At2g17410, At4g17570, At1g26610, At4g15420, At5g26610, At5g12440, At3g52250, At5g06110, At1g20640, At1g64530, At2g18090, At2g37520, At1g01260 , At5g57150

ANAC065, AtHB16, AtMYB63, BPC5,HSFB2B, LBD22, RGA2, SCL3, ZFHD3, At1g49475, At1g68520, At4g24060, At3g24050, At4g14540, At2g44730, At2g21235

Ler

ddf2, HSFC1

AGL26, ARF21, DAR7, emb2746, LBD1, MYB105, NAI1, ZFP6, At4g31680, At5g12850, At1g75530, At5g41765, At2g17150

An.1

AGL56, RD26, SOC1, SUVH1, tify5a, At1g79700, At4g15250, At2g42150,

AtGRF6, LBD14 , At3g51950

Eri

ALC, ANAC011, ANAC019, ANAC044, ANAC046, AtAF2, AtNAC3, AZF2, BPC4, COL9, DAG2, ERF5, ERF8, IAA17, IAA5, MYB59, MYBR1, RAP2.10, SHN3, SHY1, TIFY10B, WRKY22, WRKY27, WRKY28, ZFHD4, At4g01580, At2g40340, At2g40350, At4g32800, At2g45050, At3g49930, At3g60580, At3g08505, At3g14020, At1g25550, At3g12730, At5g01200, At5g05790, At3g21210, At3g53680, At2g18850, At3g21330, At3g23210 , At1g19490

AtbZIP,BZR2, DAG2 , WOX12, ZFP8, At3g23140, At1g19040

  1. List of differentially cold regulated (up and down) TFs, unique for each of the 10 A. thaliana ecotypes (significance threshold p ≤ 0.01).