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Table 3 Selected genes with altered expression during calyx abscission process

From: Identifying the candidate genes involved in the calyx abscission process of 'Kuerlexiangli’ (Pyrus sinkiangensis Yu) by digital transcript abundance measurements

Functional group Gene ID Gene description TPM (transcripts per million clean tag)
C1 C2 C3 C4 C5 C6 C7
Photosynthesis          
  Pbr041327.1 Photosystem I subunit V 62.76 208.63 58.71 123.22 106.36 69.55 42.42
Pbr001999.2 Photosystem I PsaA/PsaB 1.48 1.74 5.07 12.53 4.54 30.45 20.26
Pbr020992.1 Photosystem I PsaA/PsaB 0.62 0.80 2.82 6.942 3.08 16.94 10.13
Pbr031897.1 F-type H + -transporting ATPase subunit gamma 17.17 49.15 12.11 41.26 32.20 17.06 16.84
Pbr032910.1 Photosystem II 13 kDa protein 14.46 30.59 4.37 15.52 15.82 10.07 8.23
Hormone/signaling          
  Pbr031954.1 ACC oxidase 7 9.27 14.43 71.38 86.68 17.61 7.23 7.72
Pbr002199.1 Ethylene receptor 55.97 114.60 40.13 30.56 117.91 36.02 28.87
Pbr023072.1 Ethylene receptor 43.61 131.70 63.22 32.01 91.77 43.13 33.68
Pbr036692.1 ACC synthase 38.30 18.83 11.12 15.04 29.58 3.91 4.05
Pbr000435.1 Ethylene-responsive transcription factor 14.83 4.41 3.24 8.20 9.78 2.37 4.18
Pbr025988.1 Ethylene-responsive transcription factor 0.62 0 0 0.58 1.79 0 0
Pbr030542.1 Ethylene-responsive transcription factor 1B 4.82 2.27 2.11 35.67 12.25 2.84 4.94
Pbr021608.1 PtrAUX6; auxin influx carrier component 1.73 6.41 2.25 10.32 29.44 5.33 1.77
Pbr013424.1 PIN6; auxin efflux carrier component 111.57 52.76 32.52 89.18 27.93 6.28 19.50
Cell wall modification          
  Pbr036382.1 Polygalacturonase 17.67 1.60 0.28 25.84 2.06 0.47 0.13
Pbr014899.1 Pectinesterase 7.17 2.27 1.27 0 0 0 0.25
Pbr014900.1 Pectinesterase 6.18 2.54 1.41 0 0.28 0.12 0
Pbr033313.1 Beta-expansin 1a 163.83 69.86 189.37 93.14 147.49 139.93 167.78
Pbr035305.1 Pectate lyase 3.34 5.74 2.11 5.01 20.78 1.54 1.52
Pbr022719.1 Pectinesterase-2 9.02 2.14 0.28 2.41 1.65 0 0
Pbr011421.1 Alpha-expansin 15 7.66 3.21 0.85 3.95 6.88 2.13 2.41
Pbr005280.1 Pectate lyase 5.81 0.94 1.55 17.55 9.50 1.54 0.63
Pbr039133.1 Pectate lyase 10.39 4.01 1.83 0.29 0.28 0.24 0.38
Pbr000187.1 Xyloglucan endotransglucosylase/hydrolase 1.48 2.81 1.27 2.12 5.09 0.24 0.25
Pbr042842.1 Xyloglucan endotransglucosylase/hydrolase 6.18 6.28 2.53 4.34 11.01 1.30 0.89
Pbr040203.1 xyloglucan endotransglycosylase 6.18 5.61 3.66 3.76 4.95 1.42 1.14
Transcription factors          
  Pbr029902.1 AP2 domain-containing transcription factor 0.49 2.54 1.41 3.18 10.59 2.61 0.89
Pbr022669.1 MYB 12 transcription factor 1.24 1.74 0.28 1.83 4.27 1.42 1.14
Pbr002230.1 WRKY transcription factor 36.82 6.55 0.42 11.96 6.33 0.47 36.82
Pbr036688.1 WRKY transcription factor 38.18 6.81 0.42 12.44 6.47 0.47 38.18
Pbr010864.1 SCL domain class transcription factor 873.50 401.50 374.51 173.06 78.7 144.67 210.83
Carbohydrate biosynthesis and metabolism          
  Pbr003011.1 Alpha-amylase 293.80 76.67 33.09 255.11 32.06 24.88 25.96
Pbr008092.1 Sugar transporter 225.35 58.90 299.04 149.06 74.02 104.74 167.15
Pbr013916.1 Sorbitol dehydrogenase, 25.45 19.23 61.67 45.99 20.09 44.31 73.07
Pbr032770.1 Sorbitol dehydrogenase 1.73 0.80 0.28 1.64 0.55 0.12 0.63
Pbr013912.1 Sorbitol dehydrogenase 9.88 13.49 14.50 60.07 42.93 28.91 15.96
Pbr013913.1 Sorbitol dehydrogenase 177.79 73.46 73.92 187.82 174.87 59.48 110.42
Pbr001279.1 UDP-glucosyltransferase| 57.95 22.17 30.13 14.46 17.20 6.87 11.14
Pbr019918.1 Glycosyl Hydrolase 51.03 4.01 5.91 8.58 8.67 2.73 2.15
Pbr001745.1 Sucrose phosphate syntase 1.73 4.274 6.476 1.928 6.742 2.133 1.773
Pbr008035.1 Sucrose phosphate syntase 2.842 7.88 10.7 4.435 11.97 3.555 3.546
Pbr014962.1 Glycosyltransferase QUASIMODO1 45.34 67.32 20.98 35.87 76.09 33.41 21.78
Pbr033075.1 Glycosyltransferase QUASIMODO1 61.28 88.15 26.19 44.54 100.58 38.51 22.03
Pbr036396.1 Glucose-1-phosphate adenylyltransferase 49.54 42.47 23.37 43.10 54.35 24.17 26.34
Pbr005718.1 Beta-fructofuranosidase 10.13 3.47 0.70 0.39 0.69 0 0.89
Other differentially regulated genes          
  Pbr009422.1 Probable E3 ubiquitin-protein ligase 8.15 1.74 27.60 0.87 9.22 2.01 2.91
Pbr039793.1 Acyltransferase 45.01 11.62 17.60 7.91 20.64 3.32 4.31
Pbr032411.1 Cysteine-rich receptor-like protein kinase 28.91 7.88 9.86 28.06 4.13 0.59 1.14
Pbr013236.1 Protein IDA 60.88 13.89 9.29 32.01 3.16 0 0.38
Pbr012802.1 Predicted protein 5.19 2.00 7.88 2.41 4.27 1.19 1.52
Pbr012908.1 Predicted protein 4.20 1.34 7.74 2.41 11.56 2.84 1.01
Pbr042050.1 Predicted protein 194.34 41.00 13.37 143.47 5.78 0.83 1.52
Pbr020727.1 Unknown 546.95 188.06 250.61 93.23 87.78 245.15 177.53