Table 3 Upregulated transcripts found in both wheat and rice under –P conditions
Transcript ID | Source | Tissue | Length | RPKM (0d) | RPKM (10d) | Fold change | RAP transcripts | Gene | Gene annotation | P1BS in 1-kb upstream region of rice gene |
|---|---|---|---|---|---|---|---|---|---|---|
RFL_Contig1729 | TriFLDB | Root | 756 | 1.14 | 389.75 | 340.97 | Os03t0146800-01 | IPS1 | Non-protein coding transcript | + |
tplb0015j18 | TriFLDB | Shoot | 1,571 | 3.88 | 100.42 | 25.87 | Os02t0514500-01 | GDPD | Glycerophosphoryl diester phosphodiesterase family protein | - |
RFL_Contig1771 | TriFLDB | Root | 391 | 6.30 | 135.25 | 21.46 | Os01t0838350-01 | IPS2 | Conserved hypothetical protein | + |
RFL_Contig2948 | TriFLDB | Root | 1,360 | 22.19 | 373.52 | 16.83 | Os06t0603600-01 | SPX1 | SYG/PHO8/XPR1 (SPX) domain gene | - |
tplb0011c17 | TriFLDB | Shoot | 1,685 | 2.29 | 37.19 | 16.22 | Os08t0299400-01 | MGD | MGDG synthase type A | - |
tplb0011c17 | TriFLDB | Root | 1,685 | 2.02 | 29.80 | 14.78 | Os08t0299400-01 | MGD | MGDG synthase type A | - |
RFL_Contig1729 | TriFLDB | Shoot | 756 | 8.71 | 114.37 | 13.13 | Os03t0146800-01 | IPS1 | Non-protein coding transcript | + |
RFL_Contig1771 | TriFLDB | Shoot | 391 | 1.81 | 20.83 | 11.51 | Os01t0838350-01 | IPS2 | Non-protein coding transcript | + |
tplb0009k23 | TriFLDB | Root | 1,609 | 6.46 | 53.39 | 8.26 | Os02t0325600-01 | - | Similar to phosphate starvation response regulator-like protein | + |
tplb0015j18 | TriFLDB | Root | 1,571 | 21.91 | 170.15 | 7.77 | Os02t0514500-01 | GDPD | Glycerophosphoryl diester phosphodiesterase family protein | - |
tplb0009k23 | TriFLDB | Shoot | 1,609 | 3.35 | 21.14 | 6.30 | Os02t0325600-01 | - | Similar to phosphate starvation response regulator-like protein | + |
Contig.28393.5 | Assembled | Shoot | 1,075 | 1.17 | 6.69 | 5.73 | Os08t0433200-01 | - | Conserved hypothetical protein | + |
tplb0017d11 | TriFLDB | Root | 2,344 | 2.12 | 10.98 | 5.18 | Os04t0555300-01 | - | Similar to glycerol 3-phosphate permease | + |
Contig.28393.5 | Assembled | Root | 1,075 | 1.00 | 4.64 | 4.64 | Os08t0433200-01 | - | Conserved hypothetical protein | + |
RFL_Contig180 | TriFLDB | Root | 929 | 151.92 | 649.17 | 4.27 | Os07t0630400-01 | OsRNS1 | Ribonuclease T2 family protein | + |
tplb0002b13 | TriFLDB | Root | 915 | 16.38 | 69.34 | 4.23 | Os08t0434100-01 | OsRNS3 | S-like ribonuclease | + |
Contig.8101.10 | Assembled | Root | 2,058 | 3.74 | 14.18 | 3.79 | Os09t0321200-00 | - | Similar to carotenoid cleavage dioxygenase | + |
tplb0010d01 | TriFLDB | Shoot | 1,435 | 2.20 | 8.28 | 3.76 | Os08t0535700-00 | - | Similar to glycerophosphodiester phosphodiesterase | + |
Contig.9738.4 | Assembled | Root | 2,060 | 7.56 | 27.93 | 3.70 | Os06t0325200-00 | Pht1;10 | Major facilitator superfamily protein | - |
tplb0005p16 | TriFLDB | Root | 2,900 | 25.71 | 91.49 | 3.56 | Os10t0100500-01 | - | Serine/threonine protein kinase-related domain containing protein | + |
RFL_Contig2948 | TriFLDB | Shoot | 1,360 | 22.46 | 71.55 | 3.19 | Os06t0603600-01 | SPX1 | SYG/PHO8/XPR1 (SPX) domain gene | - |
Contig.7073.9 | Assembled | Root | 2,151 | 10.97 | 32.96 | 3.01 | Os12t0554500-00 | - | Lipase, class 3 family protein | - |
tplb0004l11 | TriFLDB | Root | 1,241 | 86.40 | 210.59 | 2.44 | Os04t0652700-01 | - | Similar to nuclease PA3 | - |
Contig.19551.3 | Assembled | Root | 756 | 3.83 | 9.28 | 2.42 | Os08t0478000-01 | - | Similar to mucin-2 | - |
RFL_Contig6043 | TriFLDB | Shoot | 1,744 | 29.56 | 69.86 | 2.36 | Os05t0475400-01 | - | Similar to alanine:glyoxylate aminotransferase-like protein | - |
Contig.7627.18 | Assembled | Root | 1,951 | 14.40 | 29.37 | 2.04 | Os06t0115600-01 | - | Similar to CYCLOPS | - |
Contig.1419.6 | Assembled | Root | 845 | 12.66 | 24.57 | 1.94 | Os09t0367700-01 | - | Similar to GST6 protein | + |
RFL_Contig5356 | TriFLDB | Shoot | 2,134 | 62.44 | 117.43 | 1.88 | Os01t0557500-01 | - | Cation/proton exchanger 1a | - |
RFL_Contig1089 | TriFLDB | Root | 1,979 | 15.97 | 29.71 | 1.86 | Os05t0387200-01 | SQD1 | Sulfite:UDP-glucose sulfotransferase | - |
RFL_Contig3773 | TriFLDB | Root | 1,915 | 14.45 | 26.40 | 1.83 | Os07t0100300-02 | - | Glycosyl transferase, group 1 domain containing protein | + |
Contig.5729.19 | Assembled | Root | 2,057 | 16.32 | 29.61 | 1.81 | Os05t0489900-01 | - | Calcium/calmodulin-dependent protein kinase | - |
tplb0005j01 | TriFLDB | Shoot | 1,911 | 42.84 | 71.03 | 1.66 | Os03t0760200-01 | - | Cytochrome P450 family protein | + |
RFL_Contig3516 | TriFLDB | Root | 2,119 | 158.24 | 256.48 | 1.62 | Os05t0137400-01 | - | Similar to aspartic protease precursor | + |
RFL_Contig1089 | TriFLDB | Shoot | 1,979 | 103.87 | 166.66 | 1.60 | Os05t0387200-01 | SQD1 | Sulfite:UDP-glucose sulfotransferase | - |
RFL_Contig3516 | TriFLDB | Shoot | 2,119 | 123.51 | 190.78 | 1.54 | Os05t0137400-01 | - | Similar to aspartic protease precursor | + |
RFL_Contig3173 | TriFLDB | Root | 2,096 | 93.45 | 143.24 | 1.53 | Os03t0826600-01 | - | Similar to phospholipase | + |
tplb0011n16 | TriFLDB | Root | 3,325 | 506.03 | 752.10 | 1.49 | Os09t0315700-01 | - | Phosphoenolpyruvate carboxylase family protein | - |
RFL_Contig3773 | TriFLDB | Shoot | 1,915 | 119.10 | 170.78 | 1.43 | Os07t0100300-02 | - | Glycosyl transferase, group 1 domain containing protein | + |
tplb0011n16 | TriFLDB | Shoot | 3,325 | 122.46 | 174.90 | 1.43 | Os09t0315700-01 | - | Phosphoenolpyruvate carboxylase family protein | - |
tplb0006o12 | TriFLDB | Root | 1,917 | 13.84 | 19.77 | 1.43 | Os01t0109300-01 | - | Similar to predicted protein | + |
tplb0002m14 | TriFLDB | Root | 1,205 | 156.19 | 221.81 | 1.42 | Os01t0897200-04 | OsRNS2 | Ribonuclease 2 precursor | + |
RFL_Contig3173 | TriFLDB | Shoot | 2,096 | 93.61 | 132.02 | 1.41 | Os03t0826600-01 | - | Similar to phospholipase | + |
RFL_Contig2349 | TriFLDB | Root | 3,073 | 304.03 | 425.90 | 1.40 | Os02t0809800-01 | PHO1:H2 | Root-to-shoot inorganic phosphate (Pi) transfer | - |
RFL_Contig3543 | TriFLDB | Shoot | 1,308 | 187.76 | 259.91 | 1.38 | Os03t0238600-01 | PAP | Similar to purple acid phosphatase | - |
RFL_Contig5356 | TriFLDB | Root | 2,134 | 20.40 | 28.11 | 1.38 | Os01t0557500-01 | - | Cation/proton exchanger 1a | - |
tplb0013h02 | TriFLDB | Root | 2,851 | 62.68 | 83.60 | 1.33 | Os10t0500600-01 | - | Zinc finger, C2H2-like domain containing protein | + |
RFL_Contig5307 | TriFLDB | Root | 1,219 | 43.36 | 57.80 | 1.33 | Os01t0128200-01 | - | Similar to nuclease I | - |
tplb0004m05 | TriFLDB | Root | 942 | 42.30 | 55.89 | 1.32 | Os02t0704900-02 | - | Similar to inorganic pyrophosphatase-like protein | + |
tplb0011n23 | TriFLDB | Root | 2,648 | 105.24 | 137.60 | 1.31 | Os01t0621900-02 | - | Conserved hypothetical protein | - |
tplb0008m02 | TriFLDB | Root | 1,657 | 149.03 | 190.13 | 1.28 | Os08t0557600-01 | - | Similar to monodehydroascorbate reductase | - |
RFL_Contig3543 | TriFLDB | Root | 1,308 | 597.17 | 755.77 | 1.27 | Os03t0238600-01 | PAP | Similar to purple acid phosphatase | - |
RFL_Contig6043 | TriFLDB | Root | 1,744 | 272.35 | 333.30 | 1.22 | Os05t0475400-01 | - | Similar to alanine:glyoxylate aminotransferase-like protein | - |
tplb0001a12 | TriFLDB | Shoot | 1,678 | 23.44 | 28.13 | 1.20 | Os06t0204400-01 | - | Similar to aminoalcoholphosphotransferase | - |
tplb0010b10 | TriFLDB | Root | 1,838 | 295.07 | 343.13 | 1.16 | Os09t0553200-01 | UGPase | UDP-glucose pyrophosphorylase | - |
tplb0017h23 | TriFLDB | Shoot | 1,988 | 97.39 | 112.72 | 1.16 | Os09t0478300-01 | - | Conserved hypothetical protein | - |
RFL_Contig3605 | TriFLDB | Root | 2,532 | 72.22 | 83.43 | 1.16 | Os09t0379900-02 | - | - | - |
tplb0004a13 | TriFLDB | Shoot | 2,730 | 389.19 | 449.07 | 1.15 | Os06t0178900-01 | - | Vacuolar H + −pyrophosphatase | - |
tplb0010b10 | TriFLDB | Shoot | 1,838 | 338.48 | 380.45 | 1.12 | Os09t0553200-01 | UGPase | UDP-glucose pyrophosphorylase | - |
tplb0006p01 | TriFLDB | Root | 1,330 | 1139.67 | 1233.89 | 1.08 | Os08t0126300-02 | - | Similar to glyceraldehyde-3-phosphate dehydrogenase | - |
tplb0013o11 | TriFLDB | Root | 2,022 | 197.87 | 210.17 | 1.06 | Os07t0622200-01 | - | Similar to M-160-u1_1 | - |