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Table 2 Distribution of fiber quality, yield, seed, leaf morphology and resistance QTL across the cotton genome

From: A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton

Fiber quality QTL traits
Chromosome FS FL Micro FU FE Color FM Perimeter  
c1 5 8 11 1 5 3 0 0  
c2 3 0 6 5 6 0 0 0  
c3 5 16 11 1 2 1 1 0  
c4 2 7 7 3 1 0 0 0  
c5 6 4 16 4 2 2 1 0  
c6 1 6 12 3 3 8 0 0  
c7 9 7 4 3 5 2 0 0  
c8 2 5 3 3 1 9 0 0  
c9 2 5 9 3 5 6 1 0  
c10 1 4 8 2 4 1 1 1  
c11 5 1 2 0 0 3 0 0  
c12 7 9 11 10 7 0 1 0  
c13 1 3 4 1 3 0 0 0  
c14 9 8 13 5 8 4 2 1  
c15 3 4 13 5 9 2 0 0  
c16 10 2 10 4 2 1 1 0  
c17 0 1 7 7 4 2 0 0  
c18 6 6 9 4 4 4 1 0  
c19 2 9 10 2 12 3 0 0  
c20 2 4 5 4 6 0 0 0  
c21 5 6 9 3 4 2 0 0  
c22 1 0 3 4 2 2 0 0  
c23 13 10 6 1 8 4 0 0  
c24 26 5 17 6 9 0 1 0  
c25 4 7 20 2 3 11 1 0  
c26 2 14 8 5 3 1 0 0  
Total 132 151 234 91 118 71 11 2  
Fiber quality and yield QTL traits
Chromosome WT Wall thick SLF HI BW LI LP SCY  
c1 0 0 0 0 1 0 0 1  
c2 0 0 0 2 1 0 0 2  
c3 0 1 0 0 0 0 1 1  
c4 0 0 0 0 1 1 1 0  
c5 0 1 0 0 2 1 2 0  
c6 0 0 0 0 0 0 0 1  
c7 0 0 0 0 0 1 3 1  
c8 0 0 0 0 0 0 0 0  
c9 0 1 0 0 0 1 1 3  
c10 1 0 0 0 0 1 1 1  
c11 0 0 0 0 1 2 3 1  
c12 0 0 0 0 1 2 2 2  
c13 0 0 0 0 0 0 0 1  
c14 1 0 0 1 4 2 1 3  
c15 0 0 0 0 1 0 1 1  
c16 0 0 0 0 1 0 2 1  
c17 0 0 0 0 0 0 1 0  
c18 0 1 1 2 3 0 0 3  
c19 0 0 0 0 0 0 0 0  
c20 1 0 0 0 0 0 0 1  
c21 0 0 0 0 1 0 0 0  
c22 0 0 1 0 3 1 0 0  
c23 0 0 0 0 1 0 3 0  
c24 0 0 0 0 1 0 0 1  
c25 0 0 0 0 2 1 0 2  
c26 0 0 0 0 2 2 3 3  
Total 3 4 2 5 26 15 25 29  
Yield and seed QTL traits
Chromosome LY BN LB Gossypol Protein Oil HP EPP LargenumFS
c1 3 0 0 0 0 1 0 0 0
c2 0 1 0 0 2 0 0 0 0
c3 1 0 0 1 3 1 1 0 0
c4 0 0 0 0 1 0 0 0 0
c5 1 0 0 0 3 1 0 0 0
c6 1 0 0 0 2 0 0 1 0
c7 2 0 0 0 0 0 0 0 0
c8 0 0 0 0 0 0 0 0 0
c9 1 0 0 0 0 0 0 0 0
c10 0 0 0 0 0 0 0 0 0
c11 0 1 0 0 0 1 0 0 0
c12 1 0 0 0 2 2 0 0 1
c13 2 0 0 1 0 0 0 0 0
c14 3 1 0 0 1 0 1 0 0
c15 1 0 0 0 2 1 0 1 0
c16 1 0 0 0 1 1 0 0 0
c17 0 0 0 0 0 0 0 0 0
c18 2 0 0 1 0 0 0 0 0
c19 0 0 0 2 3 3 0 0 0
c20 1 0 0 0 2 1 0 0 0
c21 0 1 0 0 2 3 0 0 0
c22 1 0 0 1 1 0 0 0 0
c23 0 0 1 0 0 0 0 0 0
c24 1 0 0 0 2 1 0 0 0
c25 0 0 1 0 2 0 0 0 0
c26 1 0 0 0 0 0 0 0 0
Total 23 4 2 6 29 16 2 2 1
Seed quality QTL traits
Chromosome NOFuzFib SW SI SM      
c1 0 0 0 0      
c2 0 0 0 1      
c3 0 0 1 0      
c4 0 0 0 0      
c5 0 0 0 0      
c6 0 0 0 0      
c7 0 1 1 0      
c8 0 0 0 0      
c9 0 2 0 0      
c10 0 0 0 0      
c11 0 1 0 0      
c12 2 0 0 0      
c13 0 0 0 0      
c14 0 0 3 0      
c15 0 0 0 0      
c16 0 1 0 0      
c17 0 0 1 0      
c18 0 0 0 0      
c19 0 0 0 0      
c20 0 0 0 0      
c21 0 0 0 0      
c22 0 0 1 0      
c23 0 0 1 0      
c24 0 0 1 0      
c25 0 0 0 0      
c26 0 0 1 0      
Total 2 5 10 1      
Morphological QTL traits
Chromosome FB num FB node Pubescence NFFB HNFFB Leaf morph    
c1 0 0 1 1 0 2    
c2 0 0 0 0 0 1    
c3 0 0 0 0 0 1    
c4 0 0 0 0 0 1    
c5 1 0 0 1 0 0    
c6 0 0 2 1 0 3    
c7 0 0 0 0 0 0    
c8 0 0 0 0 0 0    
c9 0 0 0 0 0 2    
c10 0 0 0 0 0 1    
c11 1 0 0 1 0 0    
c12 0 0 0 0 0 1    
c13 0 0 0 0 0 0    
c14 1 0 0 0 0 0    
c15 0 1 0 0 0 6    
c16 1 2 0 0 0 0    
c17 0 0 0 2 1 4    
c18 0 0 0 0 0 1    
c19 0 0 0 0 0 0    
c20 0 0 0 0 0 0    
c21 0 1 0 0 0 0    
c22 0 0 0 0 0 1    
c23 0 0 1 0 0 0    
c24 0 0 0 0 0 0    
c25 0 1 2 0 0 1    
c26 0 0 0 0 0 0    
Total 4 5 6 6 1 25    
Abiotic and biotic resistance QTL traits
Chromosome OP Nematode related VW Fusarium Xcm     
c1 2 1 0 0 0     
c2 1 0 0 1 0     
c3 0 2 0 0 0     
c4 0 2 0 0 0     
c5 0 7 6 0 1     
c6 1 0 0 0 0     
c7 0 13 2 0 0     
c8 0 0 2 0 0     
c9 0 4 1 0 0     
c10 0 0 0 0 0     
c11 0 17 0 0 0     
c12 0 0 0 0 0     
c13 0 0 0 0 0     
c14 0 8 0 0 1     
c15 0 4 0 1 0     
c16 0 0 16 0 0     
c17 0 0 0 0 0     
c18 0 1 0 0 0     
c19 0 6 3 0 0     
c20 0 3 0 0 0     
c21 0 3 2 0 0     
c22 0 1 2 0 0     
c23 0 2 26 0 0     
c24 0 0 1 0 0     
c25 1 0 0 0 0     
c26 0 0 2 0 0     
Total 5 74 63 2 2     
Physiological and drought tolerance QTL traits
Chromosome Chlorophyll CIR CT       
c1 0 0 0       
c2 2 0 0       
c3 0 0 0       
c4 0 0 0       
c5 0 0 0       
c6 0 0 1       
c7 0 0 0       
c8 0 0 0       
c9 0 0 0       
c10 0 0 0       
c11 0 0 0       
c12 0 0 0       
c13 0 0 0       
c14 1 1 0       
c15 0 1 0       
c16 0 0 0       
c17 0 1 0       
c18 0 0 0       
c19 0 0 0       
c20 0 0 0       
c21 0 0 0       
c22 0 0 0       
c23 0 0 0       
c24 0 0 0       
c25 0 1 0       
c26 0 0 0       
Total 3 4 1       
  1. The total QTL distributions on the genome are summarized below. The fiber quality, yield, seed, leaf morphology, and resistance related traits are summarized below.