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Table 1 Databases screened for sequence similarity

From: Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing


RNA class



Rfam v11

RNA families


Refseq NCBI (15/12/2012)

Protein coding and noncoding RNA


Gencode v13

Protein coding and noncoding RNA

[9, 50]

LNCipedia v1.2

Annotated human long noncoding RNA


Noncode v3.0

Integrative annotation of noncoding RNA


lincRNA (01/11/2012)

Annotated human long intergenic noncoding RNA


RNAdb v2.0

Noncoding RNA


lncRNA (01/11/2012)

lncRNAs in eukaryotes


Dataset 1

Bovine noncoding RNA

Personal information of the authors


Dataset 2

Bovine long noncoding RNA

Supplemental information