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Table 1 Databases screened for sequence similarity

From: Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing

Database RNA class Source/URL Reference
Rfam v11 RNA families http://www.sanger.ac.uk/resources/databases/rfam.html [49]
Refseq NCBI (15/12/2012) Protein coding and noncoding RNA http://blast.ncbi.nlm.nih.gov/Blast.cgi?  
Gencode v13 Protein coding and noncoding RNA http://www.gencodegenes.org/ [9, 50]
LNCipedia v1.2 Annotated human long noncoding RNA http://www.lncipedia.org/ [51]
Noncode v3.0 Integrative annotation of noncoding RNA http://www.noncode.org/ [52]
lincRNA (01/11/2012) Annotated human long intergenic noncoding RNA http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=lincRNAs [38]
RNAdb v2.0 Noncoding RNA http://jsm-research.imb.uq.edu.au/rnadb/ [53]
lncRNA (01/11/2012) lncRNAs in eukaryotes http://lncrnadb.com [54]
Dataset 1 Bovine noncoding RNA Personal information of the authors [47]
Dataset 2 Bovine long noncoding RNA Supplemental information [48]