Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing

BMC Genomics

Table 3 Sequence similarity of unknown transcripts to sequences detected in non-bovine RNA databases

Category	UTs Similarity	Analysed databases
lncRNA (including conserved lncRNA)	281 (227)	Gencode v13, Noncode v3.0, Lncipedia v1.2, NCBI refseq
Amended gene	67	NCBI refseq, Gencode v13
UTR of known gene	152	NCBI refseq, Gencode v13
Potential novel gene	46	NCBI refseq, Gencode v13
Pseudogene	96	NCBI refseq, Gencode v13, Noncode v3.0
Potential pseudogene	46	NCBI refseq, Gencode v13, Noncode v3.0

Screened databases were described in Table 1. Transcripts were categorised after manual curation of the similarity hits received from database searches.

ISSN: 1471-2164