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Table 3 Sequence similarity of unknown transcripts to sequences detected in non-bovine RNA databases

From: Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing

Category

UTs Similarity

Analysed databases

lncRNA (including conserved lncRNA)

281 (227)

Gencode v13, Noncode v3.0, Lncipedia v1.2, NCBI refseq

Amended gene

67

NCBI refseq, Gencode v13

UTR of known gene

152

NCBI refseq, Gencode v13

Potential novel gene

46

NCBI refseq, Gencode v13

Pseudogene

96

NCBI refseq, Gencode v13, Noncode v3.0

Potential pseudogene

46

NCBI refseq, Gencode v13, Noncode v3.0

  1. Screened databases were described in TableĀ 1. Transcripts were categorised after manual curation of the similarity hits received from database searches.