Table 1 List of BAC clones analyzed in BAC-FISH and their assignment to linkage groups

003M07

-

repetitive

-

-

Ty1/Copia

Ty1/Copia

004G15

-

single locus

004G15_3 [Genbank:GF111994]

5

gene

-

008K19

-

repetitive

-

-

-

-

009I22

-

repetitive

-

-

gene

(TA)n, (TAA)n

019P14

3

repetitive

-

-

-

-

024B01

-

repetitive

-

-

Ty1/Copia

-

032A19

7

repetitive

-

-

gene

gene

032O04

9

repetitive

-

-

Ty1/Copia

-

036J18

12

repetitive

-

-

Ty1/Copia

Ty1/Copia

044M22

3

repetitive

-

-

-

Ty1/Copia

048B06

-

repetitive

-

-

Ty3/Gypsy

Ty3/Gypsy

050C12

8

repetitive

-

-

gene, Ty1/Copia

Ty3/Gypsy

055L12

5

repetitive

055L12_13 [Genbank:GF111997]

6

Ty1/Copia

-

057J20

-

single locus

057J20_5 [Genbank:GF111995]

3

-

-

057K22

-

single locus

057K22_3F2 [Genbank:GF112002]

10*

-

-

058D20

-

repetitive

-

-

-

-

063F11

-

repetitive

-

-

-

-

064L14

5

repetitive

-

-

gene

-

065K14

-

repetitive

-

-

-

-

067H16

-

repetitive

067H16_41 [Genbank:GF111998], 067H16_43 [Genbank:GF111999]

6

Ty1/Copia

-

074I10

-

single locus

074I10_3_1 [Genbank:GF112001], 074I10_3_2 [Genbank:GF112000]

3, 7*

Ty1/Copia

Ty3/Gypsy, (TA)n

075A18

-

repetitive

-

-

Ty1/Copia

Ty1/Copia

076K16

4

single locus

076K16_3F3 [Genbank:1243111], 076K16_5 [Genbank:GF112014]

6*

-

gene

077C13

-

single locus

077C13_3 [Genbank:GF112003]

10*

-

Ty1/Copia

077C14

4

repetitive

-

-

-

-

078H13

18

repetitive

-

-

-

Ty3/Gypsy

079I08

1

repetitive

-

-

Ty1/Copia

-

080B11

-

single locus

080B11_3 [Genbank:GF111996]

6*

-

-

083C06

12

single locus

-

20*

gene

Ty1/Copia

083N13

13

repetitive

-

-

gene

-

085B02

-

repetitive

-

-

gene

gene

086G16

-

repetitive

-

-

-

-

088J02

-

repetitive

-

-

Ty1/Copia

gene

095H17

-

repetitive

-

-

-

MuDR

095I10

-

repetitive

-

-

RC/Helitron

gene

096J11

-

repetitive

-

-

-

-

096K01

-

repetitive

-

-

-

Ty3/Gypsy