Table 3 List of genes predicted in BAC clones and confirmed by annotation to Swiss-Prot, nr and EST collections with e-value cut-off 1e-50
FGENESH predictions | Alignment e-values | ||||
|---|---|---|---|---|---|
BAC clone, accession | Gene no. | Annotations by sequence similarity | est_other | nr | Swiss-Prot |
004G15, [EMBL:HE804808] | 1 | iron-sulfur assembly protein IscA-like 1 | 2.0E-54 | 1.9E-49 | 7.0E-21 |
2 | cell division protein ftsZ homolog 2-1 | 0 | 0 | 0 | |
3 | unknown gene | 1.7E-63 | 2.7E-62 | - | |
4 | probable cytosolic iron-sulfur assembly protein | 0 | 0 | 1.7E-110 | |
5 | cytochrome b-c1 complex subunit 9-like | 3.4E-75 | 2.2E-53 | 2.4E-30 | |
6 | iron-sulfur assembly protein IscA-like | 1.3E-67 | 6.5E-60 | 1.4E-29 | |
7 | unknown gene | 6.0E-105 | 2.5E-98 | - | |
8 | signal recognition particle 54 kDa protein | 0 | 0 | 0 | |
9 | small nuclear ribonucleoprotein G-like | 1.1E-69 | 1.4E-69 | 7.6E-32 | |
10 | unknown gene | 4.1E-103 | 0 | - | |
11 | 125 kDa kinesin-related protein-like | 2.3E-180 | 0 | 0 | |
13 | domain-containing protein 90-like | 0 | 9.4E-173 | 2.1E-70 | |
14 | vacuolar protein sorting-associated protein 55 | 3.9E-147 | 6.1E-146 | 7.2E-38 | |
15 | N-acetylglucosaminyltransferase SPINDLY-like | 0 | 0 | 3.9E-177 | |
055L12, [EMBL:HE804809] | 11 | GRAS family transcription factor | 0 | 0 | 2.3E-170 |
13 | aldehyde dehydrogenase family 3 member F1 | 3.2E-77 | 4.4E-64 | 4.1E-20 | |
057J20, [EMBL:HE804810] | 6 | unknown gene | 8.6E-78 | 7.3E-80 | - |
7 | formimidoyltransferase-cyclodeaminase-like | 1.7E-176 | 2.2E-176 | 1.0E-06 | |
8 | probable galacturonosyltransferase 10 | 0 | 0 | 0 | |
9 | protein TIC 20-IV, chloroplastic, precursor | 1.4E-164 | 0 | 1.1E-64 | |
13 | vacuolar protein sorting-associated protein 18 | 0 | 0 | 2.3E-155 | |
14 | unknown gene | 6.4E-60 | 1.0E-26 | - | |
16 | unknown gene | 3.2E-53 | 4.9E-52 | - | |
067H16, [EMBL:HE804811] | 2 | unknown gene | 2.4E-116 | 8.7E-117 | - |
3 | unknown gene | 0 | 8.1E-160 | - | |
4 | glucan endo-1,3-beta-glucosidase 5-like | 0 | 0 | 0 | |
5 | endonuclease V | 1.9E-117 | 5.3E-113 | 3.5E-67 | |
7 | sialyltransferase-like protein | 0 | 0 | 3.8E-12 | |
8 | auxin-induced protein 6B | 1.9E-121 | 1.4E-130 | 1.1E-17 | |
080B11, [EMBL:HE804812] | 1 | 50S ribosomal protein L35 | 7.2E-121 | 7.9E-90 | - |
2 | unknown gene | 0 | 0 | - | |
3 | myb family transcription factor APL-like | 7.6E-167 | 0 | 3.5E-43 | |
4 | isoflavone reductase homolog | 0 | 0 | 0 | |
5 | unknown gene | 6.2E-111 | 7.9E-111 | - | |
6 | unknown gene | 0 | 0 | - | |
7 | transmembrane protein 45B | 0 | 0 | 2.4E-08 | |
8 | MOB kinase activator-like 1 | 0 | 0 | 1.1E-148 | |
9 | unknown gene | 2.2E-51 | 6.6E-53 | - | |
10 | histone-lysine N-methyltransferase ASHR2-like | 5.7E-119 | 1.7E-177 | 2.5E-103 | |
14 | protein BREVIS RADIX-like | 0 | 0 | 1.3E-129 | |