Table 2 Top ten differentially expressed genes by fold-change
| Â | Transcript | Biological process | Early FPKM | Late FPKM | Fold change | q value |
|---|---|---|---|---|---|---|
Over-regulated in Early* | CG17475-RA | Proteolysis | 13.95 | 0.06 | 240.9 | 1.02×10-8 |
|  | CG31267-RA | Proteolysis | 8.22 | 0.06 | 140.7 | 1.81×10-6 |
|  | CG32833-RA | Proteolysis | 2.91 | 0.04 | 65.3 | 9.43×10-3 |
|  | CG42704-RA | Unknown | 62.64 | 0.98 | 64.2 | 2.08×10-8 |
|  | CG18417-RA | Proteolysis | 1.16 | 0.02 | 48.7 | 7.64×10-3 |
|  | CG43074-RA | Unknown | 11.81 | 0.24 | 48.7 | 3.06×10-5 |
|  | CG47205-RA | Unknown | 7.12 | 0.15 | 46.3 | 1.40×10-3 |
|  | CG31266-RB | Proteolysis | 3.44 | 0.09 | 40.1 | 1.74×10-3 |
|  | CG31681-RA | Proteolysis | 2.74 | 0.07 | 39.1 | 4.71×10-3 |
|  | CG15254-RA | Proteolysis | 2.42 | 0.06 | 37.9 | 1.40×10-3 |
Under-regulated in Early | Vml-RA | d/v axis specification | 0.11 | 221.40 | −2,059.9 | <1×10-12 |
|  | λTry-RA | Proteolysis | 0.07 | 3.27 | −46.0 | 4.39×10-3 |
|  | CG8997-RA | Unknown | 1.16 | 47.99 | −41.4 | 4.91×10-10 |
|  | CG7916-RA | Unknown | 0.78 | 31.21 | −39.8 | 1.48×10-9 |
|  | CG12057-RA | Unknown | 1.74 | 68.09 | −39.1 | 6.71×10-7 |
|  | CG7953-RA | Unknown | 0.68 | 26.10 | −38.2 | 2.34×10-9 |
|  | CG33306-RA | Unknown | 0.10 | 3.71 | −37.7 | 1.62×10-4 |
|  | chrUextra:28564682-777 | Probable rRNA | 20.61 | 709.30 | −34.4 | 2.00×10-2 |
|  | CG11911-RA | Proteolysis | 0.75 | 21.88 | −29.0 | 7.91×10-8 |
|  | CG18585-RA | Proteolysis | 0.07 | 1.72 | −24.9 | 5.45×10-3 |