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Table 2 Results of the homology testing for the transcriptome assembly for the adult female Musca domestica ALHF strain

From: A whole transcriptomal linkage analysis of gene co-regulation in insecticide resistant house flies, Musca domestica

Assembly results

Total number

Unique annotation

Contigs generated

  

Non annotated contigs†

8229

-

Predicted ORFs

5469

-

5' Partial ESTs

519

-

3' Partial ESTs

171

 

Contigs annotated

  

No annotation*

184

-

D. melanogaster ‡

5730

4265

Pfam family**

5549

2148

KEGG††

2795

1967

  1. †"Non annotated contig" indicates that no ORF was identified in the contig.
  2. *"No annotation" indicates the presence of an ORF, a start, and a stop codon, but no homology to the Pfam family HMM search, Drosophila melanogaster, or KEGG.
  3. **Pfam HMM A (v26.0) Nov 2011. http://pfam.sanger.ac.uk/.
  4. ‡ version r5.46 20 Feb, 2009. http://www.flybase.org/ .
  5. †† Release 62.0 April 1, 2012. http://www.genome.jp/kegg/ .
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BMC Genomics

ISSN: 1471-2164

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