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Table 3 List of publically available genomes used in gene content comparisons

From: Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche

Nr. Strain Name Accession Number Patho- type Category Reference
1 K12MG1655 NC_000913.2   laboratory [18]
2 O42 NC_017626.1 EAEC pathogenic [19]
3 536 NC_008253.1 UPEC pathogenic [20]
4 55989 NC_011748.1 EAEC pathogenic [5]
5 CFT073 NC_004431.1 UPEC pathogenic [21]
6 E24377A NC_009801.1 ETEC pathogenic [22]
7 H10407 NC_017633.1 ETEC pathogenic [23]
8 HS NC_009800.1   commensal [22]
9 IAI1 NC_011741.1   commensal [5]
10 IAI39 NC_011750.1 UPEC pathogenic [5]
11 LF82 NC_011993.1 AIEC pathogenic Direct Submission
12 UTI89 NC_007946.1 UPEC pathogenic [24]
13 UMNO26 NC_011751.1 UPEC pathogenic [5]
14 UMI46 NC_017632.1 AIEC pathogenic [25]
15 SE15 NC_013654.1   commensal [26]
16 SE11 NC_011415.1   commensal [27]
17 ED1a NC_011745.1   commensal [5]
18 S88 NC_011742.1 ExPEC pathogenic [5]
19 O157:H7 NC_002695.1 EHEC pathogenic [28]
20 O127:H5 NC_011601.1 EPEC pathogenic [29]
21 O104:H4 NC_018658.1 EHEC pathogenic [30]
22 O83:H1 NC_017634.1 AIEC pathogenic [31]
23 O26:H11 NC_013361.1 EHEC pathogenic [32]
24 O7:K1 NC_017646.1 ExPEC pathogenic [33]
25 NA114 NC_017644.1 UPEC pathogenic Direct Submission
  1. EAEC – enteroaggregative E.coli, UPEC – uropathogenic E.coli, ETEC – enterotoxigenic E.coli, EPEC – enteropathogenic E.coli, AIEC – adherent-invasive E.coli, ExPEC – extraintestinal pathogenic E.coli, EHEC – enterohaemorrhagic E.coli.