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Table 1 Summary statistics of the sex-average, female and male linkage maps of P. maxima

From: A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection

  

Map length (cM)

Expected genome length (Ge)

 

Average interval (cM)

No of intervals (Sex-Av.)

LG

No. of SNPs

Sex-Av.

Female

Male

Sex-Av.

Female

Male

Female: Male ratio

Sex-Av. (SD)

Female (SD)

Male (SD)

All

0-1 cM

1-2 cM

2-3 cM

>3 cM

1

129

70.30

65.53

75.29

71.40

66.55

76.46

0.87

0.99 (+/- 1.09)

1.34 (+/- 1.90)

1.30 (+/- 1.25)

71

49

14

4

4

2

129

66.27

65.12

66.02

67.31

66.14

67.05

0.99

1.20 (+/- 1.29)

1.63 (+/- 2.82)

1.18 (+/- 1.21)

55

33

11

6

5

3

97

59.36

63.96

55.25

60.60

65.29

56.41

1.16

1.14 (+/- 1.21)

2.00 (+/- 2.72)

1.67 (+/- 1.49)

52

31

12

4

5

4

89

71.86

76.94

83.76

73.49

78.69

85.66

0.92

1.41 (+/- 1.64)

2.56 (+/- 3.04)

2.54 (+/- 3.16)

51

27

14

4

6

5

82

60.02

66.78

61.63

61.50

68.43

63.15

1.08

1.28 (+/- 1.27)

1.96 (+/- 3.54)

1.81 (+/- 1.72)

47

24

15

4

4

6

46

50.35

57.52

47.35

52.59

60.07

49.46

1.21

1.68 (+/- 1.64)

3.20 (+/- 3.99)

1.58 (+/- 1.51)

30

12

11

2

5

7

46

52.33

68.90

45.13

54.65

71.96

47.13

1.53

1.94 (+/- 2.62)

6.26 (+/- 9.67)

1.88 (+/- 2.16)

27

13

5

5

4

8

55

59.98

68.53

49.12

62.20

71.07

50.94

1.40

2.14 (+/- 2.37)

4.03 (+/- 6.76)

1.64 (+/- 1.70)

28

8

12

4

4

9

53

54.18

43.18

58.91

56.26

44.84

61.17

0.73

2.36 (+/- 2.80)

5.40 (+/- 7.15)

2.81 (+/- 1.70)

23

9

7

1

6

10

40

75.56

83.88

74.40

79.43

88.18

78.21

1.13

2.61 (+/- 3.23)

4.41 (+/- 5.68)

2.57 (+/- 3.00)

29

10

8

2

9

11

34

48.29

59.08

33.20

51.21

62.66

35.21

1.78

2.30 (+/- 2.42)

3.94 (+/- 4.32)

2.08 (+/- 1.71)

21

8

5

3

5

12

34

55.68

58.78

52.49

59.05

62.34

55.67

1.12

2.42 (+/- 2.75)

3.46 (+/- 3.39)

3.28 (+/- 3.75)

23

8

6

4

5

13

27

55.36

77.13

36.34

59.62

83.06

39.14

2.12

3.46 (+/- 3.18)

6.43 (+/- 7.07)

2.60 (+/- 2.36)

16

3

4

2

7

14

26

52.13

60.52

55.96

56.30

65.36

60.44

1.08

3.07 (+/- 3.48)

5.04 (+/- 8.09)

3.50 (+/- 1.96)

17

6

3

2

6

Total

887

831.66

915.83

794.84

865.62

954.64

826.10

1.15

2.00

3.69

2.17

490

241

127

47

75

Genome coverage

96.08%

95.93%

96.22%

            
  1. Observed map length (cM), expected genome length (Ge) and average intervals are reported for the sex-average (Sex Av.), female and male maps of Pinctada maxima. In addition, the female-to-male recombination ratios and number of intervals for the sex-average map are included.