Table 2 Overall distribution of linkage disequilibrium (LD) estimates ( r 2 and D’ ) for all, non-syntenic and syntenic SNPs
Range of estimate | Number of SNP pairs | |||||
|---|---|---|---|---|---|---|
All | Non-syntenic | Syntenic | ||||
|  | r 2 | D’ | r 2 | D’ | r 2 | D’ |
0 | 100527 | 1287 | 52982 | 845 | 3459 | 47 |
0 - 0.1 | 546940 | 172025 | 300505 | 110217 | 29079 | 6844 |
0.1 - 0.2 | 8115 | 130826 | 3345 | 81149 | 2330 | 5846 |
0.2 - 0.3 | 1091 | 90856 | 178 | 53175 | 622 | 4698 |
0.3 - 0.4 | 332 | 62526 | 14 | 33430 | 244 | 3976 |
0.4 - 0.5 | 117 | 44618 | 0 | 22083 | 98 | 3231 |
0.5 - 0.6 | 50 | 33147 | 1 | 14986 | 36 | 2566 |
0.6 - 0.7 | 27 | 26074 | 0 | 10869 | 23 | 2302 |
0.7 - 0.8 | 10 | 21640 | 0 | 8427 | 7 | 1864 |
0.8 - 0.9 | 4 | 18568 | 0 | 6898 | 4 | 1639 |
0.9 - 1 | 18 | 55664 | 0 | 14946 | 14 | 2903 |