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Table 5 Selected genes with different expression trends in five fruit developmental stages

From: Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd)

Gene ID Gene annotation TPM (transcript per million clean tag)
FS1 FS2 FS3 FS4 FS5
  Up-regulated pattern      
Unigene86203_PB_AHAU Sucrose phosphate synthase 0.35 0.54 1.39 1.84 0.84
Unigene51453_PB_AHAU Starch synthase 6.75 11.07 21.31 9.69 30.83
Unigene28216_PB_AHAU Alkaline invertase 66.27 107.1 149.35 209.27 190.33
Unigene31510_PB_AHAU Phosphofructokinase 1.21 0.89 15.25 21.55 25.8
Unigene79028_PB_AHAU Maltose transporter 30.11 34.45 35.17 72.65 123.31
Unigene7706_PB_AHAU Aldehyde dehydrogenase 48.28 59.44 87.67 93.03 102.54
Unigene11393_PB_AHAU Expansin 21.63 20.35 39.33 74.99 148.11
Unigene84426_PB_AHAU ACC oxidase 8.82 13.57 13.69 6.68 159
Unigene41650_PB_AHAU 4-Hydroxyphenylpyruvate dioxygenase 0 0.54 3.47 4.01 5.36
Unigene49425_PB_AHAU Leucoanthocyanidin dioxygenase 1.73 11.07 13.34 49.77 36.19
  Down-regulated pattern      
Unigene78545_PB_AHAU Auxin influx transport protein 130.12 120.31 136.7 65.97 32.84
Unigene28595_PB_AHAU Sucrose synthase 1120.57 775.21 201.84 18.2 5.7
Unigene2239_PB_AHAU Pyrophosphate-dependent phosphofructo-1-kinase 28.38 16.42 2.08 3.01 1.01
Unigene82187_PB_AHAU Alcohol acyl-transferase 179.78 215.27 80.22 12.86 19.43
Unigene21328_PB_AHAU Alcohol acyl-transferase 185.49 154.04 102.91 14.53 9.55
Unigene41185_PB_AHAU Alcohol acyl-transferase 958.95 738.98 286.74 201.42 84.78
Unigene24664_PB_AHAU Flavonoid 3-hydroxylase 114.55 62.47 0 3.67 0.34
Unigene89425_PB_AHAU COL domain class transcription factor 100.88 80.86 13.34 10.52 4.36
Unigene40707_PB_AHAU Arogenate/prephenate dehydratase 309.04 207.23 45.74 17.04 9.21
Unigene42300_PB_AHAU UDPG flavonoid 7-O-glucosyltransferase 125.62 192.42 72.25 34.07 67.52
  Low-high-low pattern      
Unigene28017_PB_AHAU NAD-dependent sorbitol dehydrogenase 9.52 6.96 21.66 11.69 4.02
Unigene48458_PB_AHAU NAD-dependent sorbitol dehydrogenase 65.58 60.15 208.43 94.87 28.15
Unigene40996_PB_AHAU p-Hydroxyphenylpyruvate dioxygenase 0.52 1.25 12.13 6.68 8.88
Unigene36705_PB_AHAU Cytochrome P450 36.68 39.98 208.77 167.35 69.7
Unigene1335_PB_AHAU Cytochrome P450 12.46 8.21 77.96 21.38 11.9
Unigene15706_PB_AHAU Salt-tolerance protein 14.36 16.78 83.86 18.2 13.57
Unigene6651_PB_AHAU DELLA protein 44.99 40.7 80.74 32.4 51.44
Unigene29424_PB_AHAU Polyphenol oxidase 33.57 28.02 79.52 40.92 14.07
Unigene2416_PB_AHAU Gibberellin oxidase 0.35 1.61 77.96 17.7 0
  Constitutive pattern      
Unigene1535_PB_AHAU S6 ribosomal protein 650.26 506.57 717.1 432.91 403.28
Unigene42402_PB_AHAU Structural molecule activity 505.09 381.09 387.23 437.58 380.99
Unigene41042_PB_AHAU DEAD-box RNA helicase-like protein 481.38 399.83 458.09 641.68 533.46
Unigene41056_PB_AHAU Large ribosomal subunit 333.09 256.14 291.59 243.18 225.51
Unigene40598_PB_AHAU Plasma membrane ATPase 29.93 22.13 20.62 50.1 13.57
Unigene41711_PB_AHAU Plasma membrane intrinsic protein 19.38 28.92 41.23 23.88 21.11
Unigene8634_PB_AHAU Plasma intrinsic protein 1121.95 866.6 964.51 974.21 799.18
Unigene13819_PB_AHAU BHLH domain class transcription factor 212.49 243.11 169.79 168.85 206.92
Unigene3327_PB_AHAU 60S ribosomal protein L35a 180.65 182.6 166.5 154.99 138.73
Unigene40848_PB_AHAU Ribosomal protein S21e 173.03 218.12 188.33 170.36 182.62
  1. Notes: Gene ID is the accession number of each assembled unigenes deposited in the Transcriptome Shotgun Assembly Sequence Database (TSA) at NCBI.
  2. Abbreviations: DGE, digital gene expression; FS1, fruit stage 1; FS2, fruit stage 2; FS3, fruit stage 3; FS4, fruit stage 4; FS5, fruit stage 5.