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Table 1 Main characteristics of initial de novo and final draft genome assembly of X. fragariae LMG 25863

From: Draft genome sequence of Xanthomonas fragariaereveals reductive evolution and distinct virulence-related gene content

 

de novoassembly

Final draft genome sequence

Contigs (> 200 bp)

478

96

Total Contig Size (bp)

3.877.791

4.182.545

N50 contig number a

61

10

N50 length (bp) b

21.221

131.420

Average coverage

158

159

Mapped Reads (% of total)

12.846.936 (88.8%)

14.345.704 (99.2%)

Reads in Aligned Pairs (% of total)

8.485.028 (58.7%)

11.731.234 (81.1%)

  1. aminimum set of contigs that represent at least 50% of total genome sequence. bSize of the smallest contig in the N50 set.
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BMC Genomics

ISSN: 1471-2164

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