General characteristics | Most closely related knownXanthomonasT3SE | Best genbank match | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
Locus | Moved start-codon compared to PGAAP annotation | Protein length | %GC | Putative PIP | Effector class | Best match for Xf | Worst match amongst the sequences within the effector class | Locus | Organism | Similarity with Xf-sequence |
[Genbank:O1K_18811] | Â | 424 AA | 52 | Â | XopC2 | 52.8% | 94.4% | [Genbank:CCA89217] | Ralstonia | 66.6% |
[Genbank:O1K_11082] | 147Â bp to 5' side | 327 AA | 64 | ttcgcaaacgcgtgcatgctgttggc-(N)323-TTG | XopE3 | 55.4% | 97.8% | [Genbank:ZP_08184849] | X. gardneri | 78.5% |
[Genbank:O1K_20482] | 492Â bp to 5' side | 2578 AA | 64 | ttggcggccacgtgccgacgttgcc-(N)244-ATG | XopAD | 53.4% | 86.0% | [Genbank:ZP_09295361] | Mesorhizobium | 56.4% |
[Genbank:O1K_01564] | 507Â bp to 5' side | 570 AA | 56 | ttcggcaaacccactacgccttcgc-(N)222-ATG | XopD | 46.9% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 55.7% |
[Genbank:O1K_01569, Genbank: O1K_01579]a | 975Â bp to 5' side | 580 AA | 56 | ttcggcaaacccactacgccttcgc-(N)222-ATG | XopD | 47.8% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 54.7% |
[Genbank:O1K_01589] | 399Â bp to 5' side | 583 AA | 57 | ttcggcaaagccgctacgccttcgc-(N)206-ATG | XopD | 47.9% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 55.1% |
[Genbank:O1K_02164] | 453Â bp to 5' side | 666 AA | 56 | ttcggcaagcccgctacgccttcgc-(N)193-ATG | XopD | 49.3% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 53.2% |
[Genbank:O1K_03146] | 633Â bp to 5' side | 860 AA | 57 | ttcggcaaacctgctacgccttcgc-(N)156-ATG | XopD | 52.0% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 47.8% |
[Genbank:O1K_03991] | 342Â bp to 5' side | 584 AA | 55 | Â | XopD | 47.9% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 54.0% |
[Genbank:O1K_13828] | 891Â bp to 5' side | 675 AA | 55 | ttcggcaaacccgctacgccttcgc-(N)210-ATG | XopD | 47.5% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 51.6% |
[Genbank:O1K_20327] | 246Â bp to 5' side | 619 AA | 56 | ttcggcaaacccgttacgccttcgc-(N)224-ATG | XopD | 47.9% | 78.2% | [Genbank:EGH27374] | Pseudomonas | 55.8% |