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Table 2 Percentage of predicted interactions made by each algorithm that are also predicted by at least one other algorithm

From: An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury

 

InteGRaNet

mirConnX

EdgeExpress

GenMiR++

MAGIA

MIR@NT@N

TF-mRNA

1683 (8.4%)

257 (0%)

2100 (6.6%)

NA

1963 (0.5%)

0 (0%)

TF-miRNA

176 (3.4%)

12 (8.3%)

NA

NA

462 (1.1%)

49 (8.2%)

miRNA-mRNA

757 (56.8%)

6397 (0.8%)

946 (47.4%)

188 (14.4%)

5810 (4.9%)

517 (25.1%)

  1. The method that has the highest agreement rate in each type of interaction was highlighted in bold.
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BMC Genomics

ISSN: 1471-2164

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