Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid

BMC Genomics

Table 4 Genes related to heat shock proteins (HSPs), reactive oxygen species (ROS) scavenging, and pathogens resistance

Trait		Description	No. of up-regulated	No. of down-regulated	No. of no change	Sum
Heat shock proteins		Hsp90	3	1	8	12
		HSP70	8	8	20	36
		sHSP	4	11	9	24
		Other HSP	2	0	9	12
		SOD	1	1	8	10
		CAT	5	0	2	7
ROS scavenging system	GSH-AsA cycle	GLR	7	16	12	35
		APX	4	3	13	20
		MDAR	1	0	4	5
		DHAR	2	1	5	8
		GR	1	0	3	4
	GPX pathway	GST	23	20	33	76
		GPX	0	1	7	8
		POD	33	28	31	92
	PrxR/Trx pathway	Trx	25	29	79	133
	PrxR/Trx pathway	PrxR	1	5	4	10
pathogens resistance	Some proteins	PAL	6	3	7	16
		PPO	4	0	1	5
		GLU	14	12	36	62
		chitinase	15	4	17	36
	SA signaling	TGA	10	2	14	26
	SA signaling	PR1	15	12	18	45
	JA signaling	JAR1	7	2	6	15
	JA signaling	JAZ	6	6	6	18
	ET signaling	ETR	6	5	3	14
		ERF/EREBP	5	4	6	15

APX, ascorbate peroxidase; CAT, catalase; DHAR, dehydroascorbate reductase; ERF/EREBP, ethylene response factor; ET, ethylene; ETR, ethylene receptor; GLR, glutaredoxin; GLU, beta-1,3-glucanase; GPX, glutathione peroxidase; GR, glutathione reductase; GSH-AsA, glutathione-ascorbate; GST, glutathione-S-transferase; HSP, heat shock protein; JA, jasmonic acid; JAR1, jasmonate resistant 1; JAZ, jasmonate ZIM-domain protein; MDAR, monodehydroascorbate reductase; PAL, phenylalanine ammonia-lyase; POD, peroxidase; PPO, polyphenol oxidase; PR1, pathogenesis-related proteins; PrxR, peroxiredoxin; ROS, reactive oxygen species; SA, salicylic acid; sHSP, small heat shock protein; SOD, superoxide, TGA, TGACG/as-1, binding; Trx, Thioredoxin.

ISSN: 1471-2164