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Table 2 Assembly classification and contig statistics

From: The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus

  highCA lowCA all TUGs
total contigs 13851 26336 40187
contigs hitting rRNA 59 829 888
contigs hitting eel-mRNA or Chordata 1022 2419 3441
non-eukaryote contigs 1398 1935 3333
contigs remaining 11372 21153 32525
total span of remainingcontigs (in bases) 6575121 6157974 12733095
non-unique mean basecoverage of contigs 10.97923 14.66512 12.840
unique mean basecoverage of contigs 6.838352 2.443292 4.624
protein predictions byBLAST similarity 5664 4357 10021
protein predictions byESTscan 3597 8324 11921
protein predictions bylongest ORF 2085 8352 10437
contigs without proteinprediction 14 93 107
contigs with complete3’ end 2714 5909 8623
contig with complete5’ end 1270 1484 2754
full length contigs 185 104 289
contigs with GO-annotation 3875 2636 6511
contigs with EC-annotation 1493 967 2460
contigs with KEGG-annotation 2237 1609 3846
contigs with InerProScan- annotation 7557 n/d  
contigs with BLAST hit tonematode 5821 4869 10690
contigs with any BLAST hit 6008 5107 11115