Table 2 Assembly classification and contig statistics
From: The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus
| Â | highCA | lowCA | all TUGs |
|---|---|---|---|
total contigs | 13851 | 26336 | 40187 |
contigs hitting rRNA | 59 | 829 | 888 |
contigs hitting eel-mRNA or Chordata | 1022 | 2419 | 3441 |
non-eukaryote contigs | 1398 | 1935 | 3333 |
contigs remaining | 11372 | 21153 | 32525 |
total span of remainingcontigs (in bases) | 6575121 | 6157974 | 12733095 |
non-unique mean basecoverage of contigs | 10.97923 | 14.66512 | 12.840 |
unique mean basecoverage of contigs | 6.838352 | 2.443292 | 4.624 |
protein predictions byBLAST similarity | 5664 | 4357 | 10021 |
protein predictions byESTscan | 3597 | 8324 | 11921 |
protein predictions bylongest ORF | 2085 | 8352 | 10437 |
contigs without proteinprediction | 14 | 93 | 107 |
contigs with complete3’ end | 2714 | 5909 | 8623 |
contig with complete5’ end | 1270 | 1484 | 2754 |
full length contigs | 185 | 104 | 289 |
contigs with GO-annotation | 3875 | 2636 | 6511 |
contigs with EC-annotation | 1493 | 967 | 2460 |
contigs with KEGG-annotation | 2237 | 1609 | 3846 |
contigs with InerProScan- annotation | 7557 | n/d | Â |
contigs with BLAST hit tonematode | 5821 | 4869 | 10690 |
contigs with any BLAST hit | 6008 | 5107 | 11115 |