Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola

Table 1 Measurement of contigs from de novo assembly

Sample ID	N75	N50	N25	Mini	Maxi	Ave	Count	Total (bp)
Assembly of three libraries separately
Un-infected	707	1,580	2,466	160	13,127	899	42,499	38,211,860
Res-Cr2/_ (4-dpi)	661	1,495	2,408	116	20,237	872	45,236	39,447,742
Sus-cr2/cr2 (4-dpi)	663	1,390	2,188	131	13,104	855	39,135	33,478,214
Average	677	1,488	2,354	136	15,489	875	42,290	37,045,939
Consensus transcriptome	1,094	1,814	2,696	197	20,237	1,303	39,439	51,405,388
Assembly of three libraries together
	425	1113	2121	165	16,402	670	72,095	48,292,721
Common transcriptome ^(a)	1712	2409	3376	300	16,402	1041	36,923	38,447,991

^a)contigs were selected with minimum length of 300-bp and minimum mapped reads of 50.

ISSN: 1471-2164