Rfampredictiona | RNAseq identificationb | ||||||||
---|---|---|---|---|---|---|---|---|---|
Name | ID | Start | End | Bit Score | Strand | RNAseq | Start | End | Gene |
FMN riboswitch | RF00050 | 66,442 | 66,279 | 111.60 | - | observed | 66,438 | 66,198 | cg0083 |
cspA mRNA 5′-UTR | RF01766 | 186,399 | 186,766 | 60.19 | + | observed | 186,328 | 186,508 | cg0215 (cspA) |
TPP riboswitch | RF00059 | 742,654 | 742,547 | 63.54 | - | observed | 742,651 | 742,490 | cg0825 |
ydaO-yuaA leader | RF00379 | 870,027 | 869,859 | 69.93 | - | observed | 870,047 | 869,853 | cg0936 (rpf1) |
TPP riboswitch | RF00059 | 1,127,774 | 1,127,883 | 51.03 | + | observed | 1,127,765 | 1,127,874 | cg1227 |
mini-ykkC RNA motif | RF01068 | 1,131,047 | 1,131,094 | 33.52 | + | not observed | - | - | - |
TPP riboswitch | RF00059 | 1,373,213 | 1,373,103 | 55.87 | - | observed | 1,373,210 | 1,373,105 | cg1476 (thiC) |
SAM-IV riboswitch | RF00634 | 1,374,007 | 1,374,123 | 70.47 | + | observed | 1,374,005 | 1,374,139 | cg1478 |
TPP riboswitch | RF00059 | 1,544,490 | 1,544,383 | 52.11 | - | observed | 1,544,485 | 1,544,390 | cg1655 (thiM) |
yybP-ykoY leader | RF00080 | 1,550,030 | 1,550,196 | 43.71 | + | not observed | - | - | - |
yybP-ykoY leader | RF00080 | 2,043,157 | 2,042,989 | 49.13 | - | observed | 2,043,151 | 2,042,955 | cg2157 (terC) |
TPP riboswitch | RF00059 | 2,120,271 | 2,120,383 | 62.55 | + | observed | 2,120,271 | 2,120,384 | cg2236 (thiE) |
mraW RNA motif | RF01746 | 2,267,021 | 2,266,916 | 56.64 | - | observed | 2,266,932 | 2,266,800 | cg2377 (mraW) |
ydaO-yuaA leader | RF00379 | 2,292,467 | 2,292,279 | 59.37 | - | observed | 2,292,509 | 2,292,267 | cg2402 |
msiK RNA motif | RF01747 | 2,582,375 | 2,582,317 | 52.13 | - | observed | 2,582,404 | 2,582,315 | cg2708 (msiK1) |
yybP-ykoY leader | RF00080 | 2,649,004 | 2,648,890 | 49.90 | - | not observed | - | - | - |