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Table 2 Top canonical pathways generated by Ingenuity Pathway Analysis (IPA)

From: The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro

 

Ingenuity canonical pathways

p-value

Ratio

Molecules

A

TREM1 signaling

2.71 × 10-11

1.69 × 10-1

IL8, CXCL3, ICAM1, CD40, GRB2, IL10, TLR8, CASP1, IL1B, FCGR2B, NFKB1, TNF

 

Hepatic fibrosis/hepatic stellate cell activation

8.32 × 10-11

1.10 × 10-1

CXCL3, IL8, IL4R, CCR5, ICAM1, CD40, MYL6, IL10, IL6R, IL1B, IFNGR1, CCL5, NFKB1, TNF, CCR7, IL4

 

IL-10 signaling

3.82 × 10-9

1.41 × 10-1

TRAF6, SOCS3, FOS, IL4R, CCR5, MAPK14, IL10, IL1B, FCGR2B, NFKB1, TNF

 

IL-12 signaling and production in macrophages

6.87 × 10-9

8.97 × 10-2

IL10, MAF, IFNGR1, NFKB1, IRF1, TRAF6, FOS, MAPK14, CD40, ZNF668, NOS2, TNF, PRKD3, IL4

 

IL-17A signaling in gastric cells

3.33 × 10-8

2.80 × 10-1

IL8, FOS, MAPK14, CCL20, CCL5, NFKB1, TNF

B

Role of cytokines in mediating communication between immune cells

8.88 × 10-7

7.27 × 10-2

IL8, IFNB1, IL13, IL4

 

Communication between innate and adaptive immune cells

6.73 × 10-6

3.67 × 10-2

IL8, IFNB1, CCR7, IL4

 

Airway inflammation in asthma

1.81 × 10-5

3.33 × 10-1

IL13, IL4

 

Remodeling of epithelial adherens junctions

1.08 × 10-4

4.41 × 10-2

ACTR3, MAPRE1, CLIP1

 

Prolactin signaling

1.5 × 10-4

3.75 × 10-2

SOCS3, FOS, IRF1

  1. A) The list of differentially regulated on microarray (n = 418) and Ensembl reannotated genes was used as an input for IPA; B) Subset of these genes (n = 28; List eQG from [18]) was used as an input.