Table 2 Over-represented putative motifs/binding sites in the 1kb upstream promoter region of genes down/up-regulated in response to Xoo
Final motifSource | Name | Genome (35,811) | Down-reg. (514) | Up-reg. (1163) |
|---|---|---|---|---|
ACGTGG1 | ABRE/GBF1/2/3 | 6725 (19%) | 76 (15%) | 241 (21%) |
CACGTG1/2 | ABRE/G-box/NAC | 6701 (19%) | 91 (18%) | 251 (22%) |
CGTGTA1 | ABRE-like | 4266 (12%) | 63 (12%) | 164 (14%) |
ACACGT1 | ACE | 5764 (16%) | 87 (17%) | 239 (21%) |
GACACG1/2 | ACE/NAC | 5249 (15%) | 69 (13%) | 221 (19%) |
CCACGT1 | CBF2/GBF1/2/3 | 7265 (20%) | 103 (20%) | 289 (25%) |
AAAAAT1 | CCA1 2 BS in CAB1 | 24552 (69%) | 357 (69%) | 836 (72%) |
(T/C)TCCCG1/2 | E2F | 6842 (19%) | 89 (17%) | 250 (21%) |
(T)CCCGC(C )1 | E2F | 5779 (16%) | 79 (15%) | 215 (18%) |
AGCCGC1 | ERE/ERF | 6679 (19%) | 81 (16%) | 248 (21%) |
(A)GAAGC(T)1 | HSEs | 7037 (20%) | 108 (21%) | 261 (22%) |
(A)ACGTT(C )1 | HSEs | 2792 (8%) | 47 (9%) | 116 (10%) |
CGTTCT1 | HSEs | 4198 (12%) | 70 (14%) | 163 (14%) |
(A)GCTTC(T)1 | HSEs | 7588 (21%) | 121 (24%) | 297 (26%) |
GATCGA1 | Nonamer | 9377 (26%) | 137 (27%) | 344 (30%) |
AAACCC1 | TELO-box | 10238 (29%) | 148 (29%) | 404 (35%) |
TACGTG1 | ABRE/Z-box | 5252 (15%) | 73 (14%) | 198 (17%) |
AGCCGT2 | AtERF-3 | 4565 (13%) | 70 (14%) | 172 (15%) |
(A)CGTGT(C )2 | ABI5/bZIP | 5508 (15%) | 86 (17%) | 224 (19%) |
ACGTAG2 | ABI5/bZIP | 3974 (11%) | 50 (10%) | 149 (13%) |
TTAGTT2 | AtMYB44 | 11540 (32%) | 161 (31%) | 412 (35%) |
CACGT(T/C )2 | NAC | 4410 (12%) | 63 (12%) | 176 (15%) |
(G/T/A)CCACG2 | NAC | 5583 (16%) | 75 (15%) | 220 (19%) |
(C/A)ACACG2 | NAC | 5418 (15%) | 84 (16%) | 226 (19%) |
GTCACG2 | NAC | 4111 (11%) | 62 (12%) | 157 (13%) |
CACGCG2 | NAC | 6573 (18%) | 80 (16%) | 267 (23%) |
CGCACG2 | NAC | 6325 (18%) | 89 (17%) | 230 (20%) |
CACGAA2 | NAC | 5705 (16%) | 86 (17%) | 218 (19%) |
(A)TGCAT(T)2 | ABI3 | 9558 (27%) | 162 (32%) | 297 (26%) |
ATGCAA2 | ABI3 | 10545 (29%) | 172 (33%) | 335 (29%) |
CACGAG2 | NAC | 5604 (16%) | 99 (19%) | 186 (16%) |
AATGCA1 | L1-box | 8984 (25%) | 149 (29%) | 289 (25%) |
GAAAAA2 | GT-3b | 21164 (59%) | 328 (64%) | 706 (61%) |
CACATG1 | AtMYC2 BS in RD22 | 10380 (29%) | 172 (33%) | 312 (27%) |
(G)CAACA(G)1 | RAV1-A | 8308 (23%) | 151 (29%) | 273 (23%) |
CGTACA1/2 | SBP-box/SPL | 3940 (11%) | 77 (15%) | 138 (12%) |
(T)CAAGT(G)1 | SORLIP3 | 7327 (20%) | 123 (24%) | 247 (21%) |
TGACGA2 | WRKY18 | 6025 (17%) | 107 (21%) | 193 (17%) |
AAGCTT1 | HSEs | 7981 (22%) | 141 (27%) | 295 (25%) |
CACG(T/C)A2 | ABI5/NAC/bZIP | 6626 (19%) | 118 (23%) | 260 (22%) |