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Table 4 The ncRNA candidates specifically expressed in T. rubrum

From: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum

    

Genome location

 

Name

Class

Reads

Lena

Supercontig

Start

End

Position

Accession

Trnc_20

 

1

94

supercont2.1

48466

48559

3′UTR

KC353103

Trnc_1456

 

1

94

supercont2.18

53193

53100

3′UTR

KC353000

Trnc_2606

snoRNA;H/ACA-box

2

280

supercont2.36

2106

2385

Intergenic

KC353202

Trnc_2609

 

4

255

supercont2.36

4048

4302

Intergenic

KC353203

Trnc_2621

snoRNA;H/ACA-box

97

406

supercont2.36

8934

9339

Intergenic

KC353206

Trnc_2633

 

297

597

supercont2.36

17132

17728

Intergenic

KC353209

Trnc_2636

snoRNA;H/ACA-box

1

203

supercont2.36

19276

19478

Intergenic

KC353210

Trnc_2640

 

2

71

supercont2.36

21309

21379

Intergenic

KC353211

Trnc_2649

 

2

79

supercont2.36

23976

24054

Intergenic

KC353212

Trnc_3096

 

1

201

supercont2.4

2153644

2153444

3′UTR

KC353244

  1. Lena: the cDNA length of the ncRNAs; Accession is the accession number in GenBank. This table shows the lengths and genomic loci of ten ncRNAs that might be specifically expressed in T. rubrum. These ncRNAs have no hits assigned to the NCBI NT database using BLASTn.
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BMC Genomics

ISSN: 1471-2164

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