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Table 4 The ncRNA candidates specifically expressed in T. rubrum

From: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum

     Genome location  
Name Class Reads Lena Supercontig Start End Position Accession
Trnc_20   1 94 supercont2.1 48466 48559 3′UTR KC353103
Trnc_1456   1 94 supercont2.18 53193 53100 3′UTR KC353000
Trnc_2606 snoRNA;H/ACA-box 2 280 supercont2.36 2106 2385 Intergenic KC353202
Trnc_2609   4 255 supercont2.36 4048 4302 Intergenic KC353203
Trnc_2621 snoRNA;H/ACA-box 97 406 supercont2.36 8934 9339 Intergenic KC353206
Trnc_2633   297 597 supercont2.36 17132 17728 Intergenic KC353209
Trnc_2636 snoRNA;H/ACA-box 1 203 supercont2.36 19276 19478 Intergenic KC353210
Trnc_2640   2 71 supercont2.36 21309 21379 Intergenic KC353211
Trnc_2649   2 79 supercont2.36 23976 24054 Intergenic KC353212
Trnc_3096   1 201 supercont2.4 2153644 2153444 3′UTR KC353244
  1. Lena: the cDNA length of the ncRNAs; Accession is the accession number in GenBank. This table shows the lengths and genomic loci of ten ncRNAs that might be specifically expressed in T. rubrum. These ncRNAs have no hits assigned to the NCBI NT database using BLASTn.