Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

BMC Genomics

Table 1 Statistics for reconstructed regulons in studied genomes

Genome		TFs	Target genes	Target operons	Regulatory interactions
Streptococcaceae	L. lactis cremoris SK11	36	255	125	130
	L. lactis lactis Il1403	34	244	128	138
	S. thermophilus CNRZ1066	30	263	125	141
	S. agalactiae 2603 V/R	38	340	159	186
	S. uberis 0140 J	42	330	156	183
	S. equi MGCS10565	42	334	143	167
	S. dysgalactiae GGS_124	43	356	160	189
	S. pyogenes M1 GAS	40	319	150	180
	S. gallolyticus UCN34	41	328	167	199
	S. mutans UA159	41	317	147	173
	S. suis 05ZYH33	43	366	145	173
	S. mitis B6	35	305	148	174
	S. pneumoniae TIGR4	42	365	167	206
	S. gordonii CH1	41	312	167	194
	S. sanguinis SK36	43	339	163	191
	Total	591	4773	2250	2624
	Non-overlapping ¹	69	779	397	470
Lactobacillaceae	L. sakei 23 K	36	186	92	106
	L. casei ATCC 334	41	226	110	120
	L. rhamnosus GG	42	237	106	116
	L. delbrueckii ATCC BAA-365	18	69	36	37
	L. acidophilus NCFM	27	165	80	90
	L. helveticus DPC 4571	21	91	53	55
	L. johnsonii NCC 533	26	145	78	87
	P. pentosaceus ATCC 25745	38	205	97	111
	L. brevis ATCC 367	39	217	112	128
	L. plantarum WCFS1	46	299	147	170
	L. fermentum IFO 3956	30	172	85	101
	L. reuteri JCM 1112	32	167	83	96
	O. oeni PSU-1	25	109	59	70
	L. mesenteroides ATCC 8293	32	202	89	103
	L. salivarius UCC118	31	198	86	96
	Total	484	2688	1313	1486
	Non-overlapping ¹	79	539	289	328

ISSN: 1471-2164