Skip to main content

Table 3 f ^ em as an estimator of f or ffrac

From: A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms

 

α= 0.05%

α= 0.1%

α= 0.5%

α= 1%

f

MSE

Cg

MSE

Cg

MSE

Cg

MSE

Cg

0.1%

9.8e-7

4.3e-8

9.7e-7

1.2e-7

3.2e-6

2.8e-6

1.1e-5

1.1e-5

0.5%

5.5e-6

1.9e-7

5.4e-6

1.9e-7

6.7e-6

1.5e-6

1.0e-5

5.8e-6

1%

1.2e-5

8.6e-7

1.2e-5

9.6e-7

1.3e-5

2.3e-6

1.6e-5

5.6e-6

5%

5.5e-5

1.3e-5

5.9e-5

1.7e-5

8.3e-5

4.3e-5

1.0e-4

7.0e-5

  1. The mean squared errors (MSE) and Cg's of f ^ em as an estimator for f or ffrac for various combinations of f and α, (K, G, n) = (100, 10, 3000).
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us