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Table 1 Size of the comparison networks

From: A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks

  Annotated co-regulation network Chip-chip co-binding network similarity matrix of ref[34] Cis-similarity matrix
  Nodes Edges Nodes Edges Nodes Nodes
Original size 612 10,599 2,397 178,202 3,146 3,000
Similarity matrix of ref [34] 446 5,816 1,491 77,597 3,146 1,909
Cis-similarity matrix 467 6,554 1,439 73,982 1,909 3,000
Intersect with both 360 3,984 1,006 39,693 1,909 1,909
  1. This table shows the size of the intersections of the networks that are restricted by the nodes (genes names) of the sub-networks. 'Cis-similarity matrix' represents our predicted co-regulatory similarity matrix.