From: BayesHammer: Bayesian clustering for error correction in single-cell sequencing
Correction tool | Running time | k-mers | Reads | ||||
---|---|---|---|---|---|---|---|
 |  | Total | Genomic | Non-genomic | % of all genomic k -mers found in reads | % genomic among all k -mers in reads | % reads aligned to genome |
 |  | Multi-cell E. coli, total 4,543,849 genomic k-mers | |||||
Uncorrected | Â | 187,580,875 | 4,543,684 | 183,037,191 | 99.99 | 2.4 | 99.05 |
Quake | Â | 4,565,237 | 4,543,461 | 21,776 | 99.99 | 99.5 | 99.97 |
HammerNoExpansion | 30 m | 58,305,738 | 4,543,674 | 53,762,064 | 99.99 | 8.4 | 95.59 |
HammerExpanded | 36 m | 28,290,788 | 4,543,673 | 23,747,115 | 99.99 | 19.1 | 99.49 |
BayesHammer | 37 m | 27,100,305 | 4,543,674 | 22,556,631 | 99.99 | 20.1 | 99.62 |
 |  | Single-cell E. coli, total 4,543,849 genomic k-mers | |||||
Uncorrected | Â | 165,355,467 | 4,450,489 | 160,904,978 | 97.9 | 2.7 | 79.05 |
Camel | 2 h 29 m | 147,297,070 | 4,450,311 | 142,846,759 | 97.9 | 3.0 | 81.25 |
Euler-SR | 2 h 15 m | 138,677,818 | 4,450,431 | 134,227,387 | 97.9 | 3.2 | 81.95 |
Coral | 2 h 47 m | 156,907,496 | 4,449,560 | 152,457,936 | 97.9 | 2.8 | 80.28 |
HammerNoExpansion | 37 m | 53,001,778 | 4,443,538 | 48,558,240 | 97.8 | 8.3 | 81.36 |
HammerExpanded | 43 m | 36,471,268 | 4,443,545 | 32,027,723 | 97.8 | 12.1 | 86.91 |
BayesHammer | 57 m | 35,862,329 | 4,443,736 | 31,418,593 | 97.8 | 12.4 | 87.12 |
 |  | Single-cell S. aureus, total 2,821,095 genomic k-mers | |||||
Uncorrected | Â | 88,331,311 | 2,820,394 | 85,510,917 | 99.98 | 3.2 | 75.07 |
Camel | 5 h 13 m | 69,365,311 | 2,820,350 | 66,544,961 | 99.97 | 4.1 | 75.27 |
Euler-SR | 2 h 33 m | 58,886,372 | 2,820,349 | 56,066,023 | 99.97 | 4.8 | 75.24 |
Coral | 7 h 12 m | 83,249,146 | 2,820,011 | 80,429,135 | 99.96 | 3.4 | 75.22 |
HammerNoExpansion | 58 m | 37,465,296 | 2,820,341 | 34,644,955 | 99.97 | 7.5 | 71.63 |
HammerExpanded | 1 h 03 m | 23,197,521 | 2,820,316 | 20,377,205 | 99.97 | 12.1 | 76.54 |
BayesHammer | 1 h 09 m | 22,457,509 | 2,820,311 | 19,637,198 | 99.97 | 12.6 | 76.60 |