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Table 3 Assembly results, multi-cell E.coli dataset (contigs of length ≥ 200 are used).

From: BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Statistics BayesHammer BayesHammer (sca_old) Hammer, expanded Hammer, no expansion Hammer, no expansion (sca_old) Hammer (sca_old) Quake
  Multi-cell E. coli, 600 coverage, reference length 4639675, reference GC content 50.79%
# contigs (≥ 500 bp) 103 102 119 238 213 115 165
# contigs (≥ 1000 bp) 91 90 99 192 171 96 156
Total length (≥ 500 bp) 4641845 4641790 4626515 4730338 4817457 4627067 4543682
Total length (≥ 1000 bp) 4633361 4633306 4611745 4696966 4787210 4612838 4537565
# contigs 122 121 146 325 303 141 204
Largest contig 285113 285113 218217 210240 210240 218217 165487
Total length 4647325 4647270 4635156 4756088 4844208 4635349 4555015
N50 132645 132645 113608 59167 73113 113608 58777
NG50 132645 132645 113608 59669 80085 113608 57174
NA50 132645 132645 113608 59167 73113 113608 58777
NGA50 132645 132645 113608 59669 80085 113608 57174
# misassemblies 3 3 4 4 7 5 0
# misassembled contigs 3 3 4 4 7 5 0
Misassembled contigs length 44466 44466 57908 15259 30901 60418 0
Genome covered (%) 99.440 99.440 99.383 98.891 98.925 99.385 98.747
GC (%) 50.78 50.77 50.77 50.73 50.71 50.77 50.75
N's (%) 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
# mismatches per 100 kbp 8.55 8.55 13.76 44.46 44.33 13.76 1.21
# indels per 100 kbp 0.99 0.99 1.14 0.76 0.97 1.14 0.20
# genes 4254+45 part 4254+45 part 4245+56 part 4196+72 part 4204+68 part 4245+56 part 4174+62 part