New enumeration algorithm for protein structure comparison and classification

BMC Genomics

Table 2 Structure search and comparison of the three novel folds with the structural analogs

New fold	Detected analog	DaliLite	TM-align	GANGSTA+	deconSTRUCT	SSM	ePC
2JMK/7/57	1GO4H/4/93	11.0/0/75	4.0/1/67	1.8/7/61	0/0	1/14	4/100%/8.3
2AJE/7/44	1J7NB/40/738	3.9/3/45	3.4/3/45	2.1/4/53	3/31	3/61	7/100%/10.9
2ES9/5/58	1SXJH/15/267	2.5/4/57	4.0/5/65	1.8/5/69	3/36	2/38	5/100%/9.9

The results for DaliLite, TM-align and GANGSTA+ are from [7]. The format of protein entries: PDB ID/number of SSEs/number of residues in these SSEs. The format of the testing result for DaliLite, TM-align and GANGSTA+: RMSD/number of aligned SSEs/number of aligned residues. The format of the testing results for deconSTRUCT and SSM: no. of matched SSEs/no. of aligned AAs, and for our approach ePC: no. of matched SSEs/CORE-COV/score).

ISSN: 1471-2164