From: Collective judgment predicts disease-associated single nucleotide variants
Dataset (% of SV-2009) | Tool | Q2 | PPV | TPR | NPV | TNR | MCC | AUC |
---|---|---|---|---|---|---|---|---|
SV-2009 (100%) | PhD-SNP | 0.76 | 0.78 | 0.74 | 0.75 | 0.78 | 0.53 | 0.84 |
 | Meta-SNP | 0.79 | 0.80 | 0.79 | 0.79 | 0.80 | 0.59 | 0.87 |
Consensus (46%) | PhD-SNP | 0.87 | 0.87 | 0.92 | 0.87 | 0.79 | 0.73 | 0.89 |
 | Meta-SNP | 0.87 | 0.88 | 0.92 | 0.87 | 0.80 | 0.73 | 0.91 |
Majority (40%) | PhD-SNP | 0.70 | 0.67 | 0.56 | 0.72 | 0.80 | 0.37 | 0.77 |
 | Meta-SNP | 0.75 | 0.72 | 0.64 | 0.76 | 0.82 | 0.47 | 0.82 |
Tie (14%) | PhD-SNP | 0.61 | 0.51 | 0.43 | 0.66 | 0.73 | 0.16 | 0.67 |
 | Meta-SNP | 0.69 | 0.62 | 0.57 | 0.73 | 0.76 | 0.34 | 0.75 |